Lolium rigidum (rigid ryegrass): 124706202
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Entry
124706202 CDS
T09103
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lrd04131
]
124706202
Membrane trafficking [BR:
lrd04131
]
Protein recycling
Others
EARP complex
124706202
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
TetR_C_30
Motif
Other DBs
NCBI-GeneID:
124706202
NCBI-ProteinID:
XP_047093809
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Position
4:163139361..163149378
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AA seq
1076 aa
AA seq
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MRGDAPPPTAPSASSSSPASLFGGGGGGELFESGPSPLVFLPLLLIQGGGMDLSRVGERL
LSSVRSARSIGLLPPTPAPAPSRPEVPARAAAAAAAARAIAGLPPHERINLPSNSEDLVS
IYGSNPQGPPVDDLEEVFYLEEFDPIKYILANISEAGGDATYFDKQSTMRLAQLDKIAER
LSHHVMGHYEEMVKGMQLVMELEQDLKVANVICMNGRRHISSSKSEVSRDLVVNVKSKKK
QALLDVLPVLTELRHAQDMQIELETFVEKENYFQAFQLLPEYLQILENYSGLSAVQEMGR
GIEAWLARTIQKLDSRLLGVCQTFSEESYLTVIDAFALMGDIGGMAEKMQSFFLQEVLSQ
THIVLKEMLEEEVGNNTQRNRFTYSDLCVQVPESKLRPCLLKTLESIFSLMRSYYAIMSF
CPEVKTSQSPSETLVDSGRGHSSTVVNQDGVADATSDRIPSSDVSNPDASTSGADAPFYQ
LRTDATKLVAYTFERGRRNLWQLATSRLSVLLSCSAVCSTSTYQFLKNYEDLTIFILAGE
AFCGFEASEFRQKLKTVCLNYVVTFHRQNIYALKMVLEKESWTIMSAEATQIISLAGLTG
DGAALISPTSRSSTLPKECFSGTTATNKGRQKNGFASWLSIENPFSLKIENGSLESPKYN
VLFSSSAGNNSVHGNGNNSPFDEENEDLLADFIDEDSQLPSRTLKTKIVKGNSSHWKDGD
ISSQTGSSLSLLRMMDKYARIMQKLEMVNVELFKGIFQLFGIFYHHIYETFGSQDRSQSG
KPLPDSQSFRLKAALSKITQDSDQWIKPQNSLYPSSSPLSMNSTISQMDVMPTAPPSSMF
TSYGLKERCTAAETLSLVARVLNRSRAHLHSVLSQSSTSVVEEFFGTLVDTVPDLAEHIH
RTSARMLLHINGYPDKIANAKWEVKELGIEHNGYVDLLLGEFKHYKTRLDHGGISKELQQ
LLLEYGIESLAEVLVEGLSRVKRCTDEGRALMSLDLQVLINGLQHIVSSNVRPKLQTVDT
FVKAYYLPETEYVHWARSHPEYSKTQVVGLVNLVATMKGWKRKTRLETIERIEAGP
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcgacgcgccgccgcctacagcgccctctgcctcctcctcctccccagcctcc
ctcttcggcggcggcggcggcggcgagctcttcgagtcggggccctcgcccctggtcttc
ctgcccctgctcctgatccagggcggcggcatggacctctcccgcgtcggcgagaggctc
ctcagctccgtccgctccgcgcgctccatcggcctcctcccgccgacccccgccccagcc
ccttcccgccccgaggttccagctcgagctgctgccgcggcggcggctgcccgcgcgatc
gcggggctgcccccgcacgagcggatcaacctgccgtccaattccgaggacctcgtctcg
atctacgggagcaacccgcagggcccgcccgtggacgacctcgaggaggtcttctatctg
gaggagttcgacccgataaagtacattctggccaatatatcggaagcaggaggtgatgcc
acctacttcgataagcagtctactatgagattggcgcagcttgacaagattgccgaacgg
ttgtctcatcatgttatgggtcattatgaggaaatggtgaaggggatgcagttagtgatg
gagctagaacaagacttaaaggtcgcaaacgtaatctgcatgaatggtcgaaggcacata
tcctcttcgaagagtgaggtgtcaagggatctggttgtcaatgtaaaatcaaagaagaaa
caagctttgctggatgttcttcctgttcttacagaacttcgacatgctcaagatatgcag
atagagcttgaaacttttgttgagaaagaaaattactttcaggcatttcaattattgcca
gagtatttgcaaatcttggagaactattcaggcctttctgctgtacaagaaatgggacga
ggtattgaggcatggttagcaaggacaatccaaaaattggacagccgtttgctgggagtt
tgtcagaccttcagtgaagaaagctatctaaccgtgattgatgcatttgcattgatgggt
gacattggtggcatggccgaaaagatgcagagcttctttttgcaagaagtactctctcaa
acacatattgttctgaaagaaatgctggaagaggaagtgggaaataatacccagagaaat
agatttacatatagtgatctttgtgttcaagttcctgagtccaaacttcggccctgcttg
ttaaaaactcttgagagcatattttcgttgatgcggtcatattatgctattatgagcttc
tgcccagaagtaaagacgtctcagagcccaagtgaaactttagttgattcaggaagaggt
cattcaagtacagttgtcaatcaggatggtgttgcagacgcaacgagcgacaggatacca
tcttctgatgtcagcaatcctgatgctagcacatcaggagcagatgctccattctatcaa
ctgaggacagatgctacaaaacttgttgcttatacatttgaaagggggcggagaaatctt
tggcaactggcaacaagtcgcttgtctgttttgctgtcttgttcagctgtttgttcaact
agcacataccaatttctgaagaactacgaagatctcacaatattcattttggccggtgaa
gcattttgtgggttcgaagctagtgagttccggcagaagttgaagactgtctgtttgaac
tacgttgtgacctttcaccggcaaaatatatacgcacttaaaatggtactggaaaaggaa
tcttggacaataatgtcagctgaagctacgcagataattagtttagcaggacttactggt
gatggtgctgcactgatttcacctacgagccgtagttctaccttgccaaaagaatgtttc
agtggaactactgcaactaataaagggaggcaaaagaacggatttgcttcctggctcagt
attgagaacccattttctttgaagatcgagaatggctccttggaatcccctaaatataat
gtgctgttcagctcatcagctggtaataattctgtccatggaaatggaaataattcacct
tttgatgaagaaaatgaagaccttctcgctgatttcattgatgaagatagccaattaccc
agtaggacattgaaaacaaaaattgtgaaaggcaattcttcacattggaaagatggagac
atttcttcgcagacaggatcatcactttctttgttaaggatgatggacaaatatgccaga
attatgcaaaagctggaaatggtcaatgttgagctttttaagggtatcttccaacttttt
ggcatcttttatcaccacatatacgagacatttgggtctcaggacaggagtcaaagtggc
aagccgttacctgattcccaatcatttcggcttaaagcagctttatcaaaaataacacaa
gactcagatcagtggatcaaaccacagaacagtttgtatccatcttcatcacctttatcg
atgaattcaactatttctcaaatggatgtgatgcctactgcgcctccgagctcaatgttc
acctcctatggtttaaaggagagatgcacagctgccgaaacactatctttggttgctcga
gttttgaacagatctagagcccatctacattccgtgttatctcaaagtagcacctccgtt
gtcgaagagttttttggaacactggtggatactgttcccgatttggctgagcacatccat
aggacaagtgcacggatgcttttgcatattaatgggtacccagataagatagcaaatgct
aaatgggaagtcaaggagcttggcatagagcacaatgggtacgttgatttattattgggc
gagttcaaacattacaaaacaagattggaccatggaggaatctctaaggagctccaacag
ctcttgctggagtatggcatagagagccttgcagaagttttagttgaaggactctccaga
gtgaaaaggtgcactgacgaaggacgtgcattgatgtcacttgaccttcaggtactaatt
aatgggctgcaacacattgtatcgtcaaatgttaggccaaagctgcaaactgtggatact
ttcgtaaaggcttattatctgcccgagacggagtatgttcactgggcgcggtctcatcca
gagtacagcaagactcaggttgttgggttggtcaacctggttgctaccatgaaaggatgg
aaaaggaaaacgaggttagaaaccatcgagaggattgaggcaggaccctag
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