Lolium rigidum (rigid ryegrass): 124706207
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Entry
124706207 CDS
T09103
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124706207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124706207
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
124706207
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_11
TPR_16
TPR_8
TPR_CcmH_CycH
TPR_19
TPR_12
TPR_7
TPR_9
CFAP70_TPR_C
TPR_MalT
BTAD
ARM_TT21_C
TPR_15
CFAP70_mid_TPR
Motif
Other DBs
NCBI-GeneID:
124706207
NCBI-ProteinID:
XP_047093813
LinkDB
All DBs
Position
4:complement(163624891..163632850)
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AA seq
1150 aa
AA seq
DB search
MSKQGAAEEEAERLLAAAKLNPNDGGPFRSLGHHYARAGDAQRAARCYQRAVALDPDDAE
AGEALCDLLDVDGKESLELAVCKDAAGKSPRAFWAFRRLGYLQVHQNKWSEAIQSLQHSI
RGYPTCADLWEALGLAYHRLGMFTAAVKSYGRAIELDSSRVFALIESGNIQLMLGYFRKG
VEQFRLALELAPHNHSAYFGLASALLAWSRHCVSTGAFTWAANLLKEASEAAKACSSLTR
NLSCVWKLHADTQLALARCFPWEHGDIKWGMDEHTFKASVLEWRSTCLSAANGAKLSYQR
ALHLTPWEANIHIDTAACLDLICTMEENNSVDPITWELPEKMSLGGLMLEPVNKDFWVTL
GLVSSNQALKQHSLIRALHLDMSLSEAWAYLGKIYRQSGHKELARQAFDRARSIDPSLAL
PWAGMSAEDHNQYGAGAVNESYESCLRAVQILPLPEFQIGLGTIAARSGELLSPQVLMAV
RQAVQRAPHYPESHNINGLVAEVRSDFQSAIASYQQAKFALGMMCRSKLDNRYPFVDVSL
NLARSLCKAGLATDAARECEELKTKGLLNVDGLQTYAFALWKLGRHDEALSVSRNLAENL
PSMKQESATGALGFICTLAYNITGKDSAALVIHTLPGQPSYNRELKFIISALDALQPNKR
FQLPQLSTPPRLTSYEVMSEVHSNIALGKAIGGESNSCLGVEGGLSYLKKVLHMYPDSSL
VRNHLGSLLLSGGDWTASHKAVRVTSLSHGHTSNRGLRSPHQIQASATVSCYATCTSYPK
FSFPTCEDQYLSQYNALCNLQRLVHQEPWNQDARYLLVLAIFQKAREEKYPKHISTILKR
LILQVLSSRSNSEEHKIILYEKYLLLLLSSEISLQSDDHANCIAQATGALRVTSPSADAF
FAHLQLCRAYVVQGDLSSSRKEYMKCLQNRTNTEIGWVMLKQLESLCSLSPGSDEIEINL
KECIERKGSNPSKWASLFNLACAQSSMRVEDFASAEKALAQACAEKDADSCILFLNGAMN
MEIARRYAAPQYISRAASSLRKAQQKSQATVPIVSLLLAQAEGSLGSKAKWEKNLRLEWF
SWPPELRPAELYFQMHLLASQLTAATAPQQKQQLLLPETMQSPGAWLLRAIHQNPSCPRY
WKALEQLVYV
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcagggcgcggcggaggaggaggccgagcgcctcctcgccgccgccaagctg
aacccgaacgacggcgggcccttccgctccctcggccaccactacgcccgcgccggcgac
gcgcagcgcgcggccaggtgctaccagcgggccgtggccctcgaccccgacgacgccgag
gctggggaggcgctctgcgacttgcttgatgtggacgggaaggagagcttggagcttgct
gtgtgcaaggacgctgctggcaagtcgccgcgtgcgttttgggcattcaggagactcggc
tacttacaggttcatcaaaacaaatggtcagaggctatacaaagccttcaacactcaata
cgaggttacccgacatgtgctgatttatgggaggcacttggactggcttaccaccgtttg
ggcatgttcactgctgcagtaaagtcgtatgggcgtgctattgaactcgatagttccagg
gtctttgcgttgattgaaagtggaaacatccagctgatgcttggttatttcagaaaggga
gttgaacagtttcgtttagccttggagttggctcctcataatcattctgcatactttggg
cttgcttctgcattgcttgcttggtcaaggcattgtgtatctactggggcgtttacctgg
gcagctaatctgttaaaggaagcatcagaagctgctaaagcttgttcttccttgaccaga
aatctttcctgtgtttggaaattgcacgcagacactcagcttgcacttgcaagatgcttt
ccgtgggagcatggtgatatcaagtggggcatggatgagcatactttcaaagcttctgtc
cttgagtggagaagtacatgtttgtcagctgcaaatggtgcaaaactctcatatcaacga
gctttgcatctcacaccttgggaagctaatattcacattgatactgctgcttgtcttgat
ctcatttgtaccatggaggagaataactctgtagacccgataacttgggagcttccagag
aaaatgtcattgggtggtttgatgttggaaccagttaataaggatttctgggtcacattg
ggtttagtgtcaagtaatcaggctttaaagcaacattctcttatcagggcactgcatttg
gatatgtctctctctgaagcttgggcataccttggaaagatttacagacaatcaggtcac
aaggaattagcaagacaagcatttgaccgagctcgaagcattgatccttcattggccttg
ccatgggcaggaatgtcggcagaagatcataaccaatatggggctggtgcagtaaacgag
tcttatgaaagctgcttgagagctgtgcagatactacctctgccagagttccagattggc
cttggaactattgctgctcgttctggtgaacttctgtcacctcaggtattgatggctgta
agacaggctgttcagcgagcgcctcattacccggagtcacacaatataaatggattggtt
gctgaagtccgatcagactttcaatctgcaatcgcatcttaccaacaggcgaaatttgct
ttaggcatgatgtgcaggtccaagttagacaacagatatccttttgttgatgtttcgctg
aatcttgcccggtcactttgtaaggctggtcttgcaactgatgcagcacgggagtgcgaa
gagttgaaaacaaaagggttgctgaacgttgatggattacagacatatgcttttgcattg
tggaaacttggacggcatgacgaagctctctctgtatcaagaaacttggctgagaattta
cctagtatgaagcaggagagtgcaactggagcattgggattcatatgcaccttggcatac
aacatcaccgggaaggattctgcagctttagtcattcatacactccctggtcaacccagt
tataacagagaattgaaattcatcatctctgcattagatgctttgcagccaaataagcgt
tttcagttacctcaattgagtacgcctcctagacttacatcctatgaggtgatgagtgaa
gtccactcaaatattgctctggggaaggcaattggtggggaatcaaacagctgtttaggg
gtcgagggtggtttgtcttacctgaaaaaggttctgcacatgtatcctgattccagttta
gtaagaaaccatcttggatcgctgctgctgtccggtggagattggactgcttctcataaa
gcagtaagggttacttcattgtcccatgggcacacatccaatagaggcctaaggtctccg
catcaaattcaagcatctgcaacagtgtcttgctatgctacctgcacttcttatccaaag
ttctcattcccaacatgtgaagatcagtacttaagtcaatacaatgcactatgcaacctg
caaaggttggttcatcaggaaccatggaaccaagatgcacggtacctgcttgtacttgct
attttccaaaaagcacgtgaagagaagtaccccaaacacattagtaccatcttgaagagg
ttgattctacaagtactgtccagcagaagcaattcagaagagcataaaatcatcctttat
gagaagtacttgctactcctattgtcttcagagattagtttgcaatctgatgaccatgca
aactgcatcgctcaagctacaggtgctctaagagttacttctccaagtgcggatgctttc
tttgcacacttgcaactgtgtcgggcttatgtggtgcaaggtgatctttcaagctccagg
aaggagtacatgaagtgcttgcagaaccggacaaatactgagattggctgggtaatgctg
aagcaactagaatctctatgttcactgagccctggctctgatgaaatagagataaatctc
aaagagtgcattgagaggaagggtagcaacccatcaaaatgggcatctctttttaatcta
gcatgtgctcagtcctctatgcgggttgaggactttgcaagtgctgaaaaagctctcgca
caggcttgtgctgaaaaggatgctgatagctgcatcttatttctcaatggagcgatgaat
atggaaattgcccggaggtatgcggctcctcaatatataagccgtgcagcttcgagcctc
agaaaggcacagcagaaatctcaagctacggtacccatcgtatcactcctactggcccaa
gcggaaggcagccttggctccaaagccaagtgggagaaaaatcttcgcctcgaatggttc
tcatggcccccagaactgaggcctgcggagctctatttccaaatgcatctgttggctagc
cagttgactgcagcgacagctcctcagcagaagcagcagttgctgctgccggagacgatg
cagagccctggtgcgtggcttctcagagcgatacaccagaacccgtcgtgccccaggtac
tggaaggccttggagcagcttgtgtacgtgtaa
DBGET
integrated database retrieval system
