Lolium rigidum (rigid ryegrass): 124706393
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Entry
124706393 CDS
T09103
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd00040
Pentose and glucuronate interconversions
lrd01100
Metabolic pathways
Module
lrd_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
124706393
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
124706393
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
AbiEi_3
NosD
Motif
Other DBs
NCBI-GeneID:
124706393
NCBI-ProteinID:
XP_047094016
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Position
4:81926833..81928645
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AA seq
422 aa
AA seq
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MASHALLFSVSLLVPLFLCVLAKGDMTVIPSKNGADHRGRSLQSTKVVNVLRYGAYGDGV
HDDTKALSKAWSAACSSSLPGIVLIPKGKKFLTKHVTFSGPCKSSIKFMIEGTLVAPPKR
SYWIEDTIRHWVLFINVRDLTVTGGGTIDGNGKIWWQSSCKVNSKLPCRPAPTALTFYSC
TNLKVDDLELLNSQQIHMSVERCTNVRVSRLLITAPGTSPNTDGIHIAHSKDVKVYNCAI
KTGDDCMSIEDGTKNLHVKNIVCGPGHGISIGSLGDQNSEAQVTNITINGVRLHGTTNGA
RIKTWQGGRGYAKNIVFENIIMDNVWNPIIIDQNYCDSTTPCNKQKSAVEVSNVLFKNIR
GTSASRDAIKLSCSRTVPCHGIALHNVKLTLKRGNGNAKSTCQNAKYRTLGTVMPQPCIL
KN
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcatgcgcttcttttctctgtatcccttctagtgccattgttcttgtgtgtt
cttgcgaagggagacatgacagtgatcccttctaaaaatggggctgatcatagaggtagg
tctctacagtccactaaggtcgtcaatgtgctgaggtatggagcttatggggatggagtc
catgacgacacaaaggcattgtcaaaggcgtggtctgcagcttgctcctcttctcttcct
ggcattgtgctcatccccaagggaaagaaatttctaacgaaacatgtaaccttttccggc
ccatgcaaatccagtatcaagtttatgatagagggtactttggtggctcctccaaagaga
tcatattggatcgaggataccattaggcactgggttttgttcataaatgtgagagatctt
actgtcactggtggtgggactattgatggaaatggcaagatttggtggcaaagttcctgc
aaagtaaactcaaagctcccttgcaggccagctccaacggctttgacgttctactcttgc
acaaatctaaaagtggatgacttagaactgttgaacagccaacaaatccacatgtcagta
gagcgttgcaccaatgtaagggtgtcccgcctattaatcacagcacccggtactagcccc
aacaccgacggcatccatattgcacatagtaaggatgtgaaagtgtacaactgtgcaatc
aagactggggatgactgcatgtcgatcgaggatggaactaagaatctacatgttaagaac
atcgtgtgtggaccagggcatgggatcagcattgggagtttaggtgatcaaaactctgaa
gctcaggttacaaatatcactatcaatggggtgcgactacatggcacgacaaatggagct
cgtatcaagacatggcagggcgggcggggttatgcaaagaatatcgtgttcgagaacata
atcatggataatgtatggaacccaatcattattgaccaaaactactgcgactcgactaca
ccgtgtaataaacagaaatcggcagtggaagtgagcaacgttctgtttaagaacatcagg
ggcacaagtgcctcaagagacgctatcaagctgagttgtagtagaactgtaccttgccat
ggcatcgccttgcacaacgtcaagcttactctaaaacgaggcaatggcaacgcaaagagc
acctgtcagaatgcaaaatataggacactgggaacagttatgccacaaccatgtattctc
aagaattga
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