Lolium rigidum (rigid ryegrass): 124706885
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Entry
124706885 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03015
mRNA surveillance pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124706885
09122 Translation
03013 Nucleocytoplasmic transport
124706885
03015 mRNA surveillance pathway
124706885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124706885
03041 Spliceosome [BR:
lrd03041
]
124706885
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124706885
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124706885
Spliceosome [BR:
lrd03041
]
Complex C
Other components
EJC/TREX
124706885
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124706885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
124706885
NCBI-ProteinID:
XP_047094507
LinkDB
All DBs
Position
4:complement(204901095..204905925)
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AA seq
428 aa
AA seq
DB search
MMGEAKEAEVYEEELLDYEEDDDKAVDGAAAAKADVAKKGYVGIHSSGFRDFLLKPELLR
AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGHVAALV
LCHTRELAYQICNEFERFSKYLSELKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPI
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagaggccaaggaggccgaggtgtacgaggaggagctcctggactacgaggag
gacgacgacaaggcggtcgacggcgccgccgccgccaaggctgacgtcgccaagaagggc
tacgtcgggatccacagctccggattcagggacttcctgctcaagcccgagctgctcagg
gccatccaggactgcggatttgagcacccgtccgaagtgcaacatgagtgcatccctcaa
gcaatcctcgggatggatgtcatctgccaagcaaagtcagggatggggaagactgctgtt
tttgtcctgtcatctcttcagcaaattgaccctgttgctggtcatgtggcagcacttgta
ttgtgccacacacgagagttggcttaccagatatgcaacgagtttgagaggttcagcaaa
tatctgtctgaattaaaggttgctgtattctatggaggtgttcacatcaagaagcacaag
gatttattgaagaatgactgccctcatattgtggtgggcactcctggaaggattcttgct
ctagctagagacaaggacctttctttgaagaatgtgaggcatttcattcttgatgagtgt
gacaagatgctcgagtcacttgacatgaggagggatgtccaggagatcttcaagatgaca
cctcatgataagcaggtcatgatgttttcggcaacactcagcaaggagatccgtccgatt
tgcaagaaatttatgcaagatcctatggaaatttatgttgacgatgaggccaagttgacc
cttcatggtcttgtacagcactatataaaattgaccgaggcagagaagaaccgtaaatta
aacgatctcttggatgcccttgatttcaaccaagttgtgatatttgtgaagagcgttagc
agggcagcagagttgaacaagctgctttgcgaatgcaacttccctgcaatcagcatccat
tctggcatgacgcaggaagaaaggttgactcgatacaagaacttcaaggaaggacacaag
aggatcctcgtggccacagatctagtgggcagaggaattgatattgagcgtgtcaacatc
gtgataaactacgacatgcctgattcagctgatacatacctgcacagggttggaagggct
ggccgttttggcaccaaggggcttgctataacttttgtttcctcggcctcggactcggat
gttcttaaccaagtgcaagagaggttcgaggttgacatcaaggagctgcctgagcagatt
gacacatcaacttacatgccgtcataa
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