Lolium rigidum (rigid ryegrass): 124707072
Help
Entry
124707072 CDS
T09103
Name
(RefSeq) protein SUPPRESSOR OF PHYA-105 1-like
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
124707072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lrd04121
]
124707072
Ubiquitin system [BR:
lrd04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
124707072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
EIF3I
Pkinase
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
WD40_RFWD3
DUF6640
WD40_like
PK_Tyr_Ser-Thr
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
124707072
NCBI-ProteinID:
XP_047094683
LinkDB
All DBs
Position
4:219088404..219097178
Genome browser
AA seq
1288 aa
AA seq
DB search
MEGTTAAEVGGGGVGDAQIKPVPPQPSGSEALEMPATPLPLTRELDWSEHFSFFNSEAGT
TTDGARGVALSNSVSRPADSVTQQQRCLDSGADERVEELTVRNCISSEAQPEASAAGSSG
GGERPAVMRGLWGNFTRMAWRTGDAASREALLAASRGDTARENLAASRGDVANMRNGDLV
GRENFAVNRGDTANLRNGDVVSRENLAVNLGNNKISLNFDASSAKEMPFSRAENATSTDF
NMSFGSQQQQHILSSRPNQSEQQQQHILSSRHNQSEQQQQHILSSRHNQSEQQQQHILSS
RHNQSEQQQQHILSSRPNQSEQQQQHILSSRPNQGEQQQQHVLSSRPNQGDQQQHILSSR
PNQSEQQQHMLSSRPNQGEQQQQHILSSWQNQGEQQRTERENGMKMSSFSNRIIDQMRSK
TATPSSGLQGSPLKNGFKGKGVSHQAAREDMQLQASARLRAPIPKIPISTHDPVTRLDGT
FFNAAGNVTESQHEGTSLRELIKPARQAMSKFEKMHLFKQILDHVDKSHAQGLTLQHLRP
SYFIVTSPNQVKYTGSYTTQDLSAPAKPEMAADEVFNRKRFLDQKTALQESNGNGNSILK
YQKVGEQGSVAIRRPIHAFRTDHRGGNQREGADLGASGQGNSSCTARGRFKFGEPYYGSN
ASYAQRSSNYGNQESVVEPRVLEDSWYRSPEELSQLKGTFPSNIYSLGVLLFELFCCCET
WEQHCAAMSDLRHRILPPSFLSESPREAGFCLWLVHPDPCSRPKAKDIQGCDLINEGRDL
SLLDKEPAAVNEDDTESGLLLNFLSQLKEEKEMQAAKLSADLASLQTDIVEADRRHSLRM
GFTLEDMDVLASSNDVPGTSSNALRGGALLSGAIPPSVRSSIYEERVMRNLEQLENAYYS
MRSTIDTSDTNVIKRPDNDALRVRENFSQLHSDTDVMDGQTDRLGCFFDGLCKYARHSRF
EVRGILKNADILSSPNVICSLSFDRDEEYFATAGVSKKIKIFEFNALLNDRVDIHYPLVE
MPSKSKLSCVSWNNYIKNYLASTDYDGTVQLWDASTGQGFTQFTEHRKRAWSVSFSEVDP
TKLASGSDDCCVKVWSINQKNCVDTIRNVANVCCVQFSPYSSRMLAFGSADYKTYCYDLR
HTRIPWCTISGHGKAVSYVRFLDPETLISASTDNTLKIWDLNQTNPSGLSTNACSLTLSG
HTNEKNFVGLSVHDGYITCGSENNEVYSYYKTFPMPITSHKFGSIDPITGQETNDDNQQF
VSSVCWRGRSNMVVAANSSGSIKVLELV
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggaagggacaacggcggcggaggtgggcggcggcggggtgggggatgcgcagattaag
cccgtgccgccgcagccgtcggggagcgaggcgctggagatgccggccacgccgctccct
ctaacccgcgagctcgactggtccgagcacttctccttcttcaactccgaggccggcacc
accacggacggggctaggggcgtcgccctgtccaactccgtctcgcggcccgccgacagc
gtcacccagcagcagcggtgcctcgacagcggcgccgacgagagggtggaggagctcacc
gtcaggaactgcatcagttcggaagcccagcccgaggcctccgctgccgggagctccggc
ggcggggagaggccggcggtcatgaggggcctgtggggcaacttcacaaggatggcctgg
aggactggggatgcggctagcagggaggcattattagcagcgagccgtggcgacactgct
agggagaacttagcagcgagtcgcggcgacgttgcaaacatgaggaatggtgatctggtt
ggcagggagaactttgctgtgaatcgtggcgacactgcaaacttgaggaatggcgatgtg
gttagcagggagaatttggcggtgaacctcggcaacaataagatctctctcaactttgat
gcctcttctgccaaggaaatgccgttcagccgcgccgaaaatgcgactagtacagacttc
aatatgtcatttggtagtcagcagcagcagcacattctgtcctcgcggcccaatcaaagc
gagcagcagcagcagcatatcctgtcgtcacggcacaatcaaagcgagcagcagcagcag
catattctgtcgtcacggcacaatcaaagcgagcagcagcagcagcatattctgtcgtca
cggcacaatcaaagcgagcagcagcagcagcatatcctgtcgtcacgacccaatcaaagc
gagcagcagcagcagcatatcctctcctcacggccgaatcaaggcgagcagcagcagcag
catgtcctctcctcacggccgaatcaaggcgaccagcagcagcatatcctgtcttcacgg
ccaaatcaaagcgagcaacagcagcatatgctgtcctcacggccgaatcaaggcgagcaa
cagcagcagcatatcctgtcctcatggcagaatcaaggtgagcaacagcggactgaaagg
gagaacggtatgaagatgagtagcttctctaatagaattattgatcagatgaggagcaag
actgcaacaccctcatctgggcttcagggttccccgcttaagaatggattcaagggtaaa
ggggtttcccaccaagctgcacgcgaggacatgcagcttcaagctagcgcaagactcagg
gcccctattcctaagattcctatctcaacgcacgaccctgtcaccagattggacggtaca
tttttcaacgctgccggaaatgttaccgaatctcagcatgagggaaccagcctgagggaa
ctaattaagcctgcacgccaagcgatgagcaaatttgagaaaatgcatttgtttaagcag
atccttgatcatgtagacaaatctcatgcacagggtttaaccttacagcatttacggcca
tcgtattttatagtcacatctccaaaccaagtaaaatatactggttcttatactacacaa
gatttatcagccccagccaaaccggaaatggccgcagatgaggtttttaacagaaaacgg
ttcttagatcagaaaactgcgctgcaagaatctaatggcaatggaaattcaatcctaaag
tatcagaaggtcggtgaacaaggttctgttgccatcaggcgaccgatacatgccttccgg
actgaccacagagggggcaaccaacgtgaaggcgctgatttaggtgcttcaggacaggga
aattctagttgcactgccagaggacgttttaagtttggcgaaccttactatggcagtaat
gcatcttatgcccagcgttcatctaattacggcaaccaagaatcagtagttgaaccgagg
gtgctggaagatagctggtacagaagcccagaagagctcagtcaattgaaaggcacattc
ccatccaacatctacagccttggggttcttctatttgagctgttttgctgctgtgagaca
tgggagcagcattgtgctgcaatgtcagatcttcgccatcggatcctgcctccaagtttt
ctttcagaaagtcccagagaggctggcttctgcctttggctagtgcatccggatccttgt
tctcgacctaaggcaaaggatattcaaggatgtgacttgataaatgagggtcgggatttg
tcgttgttagataaggaaccagctgctgtcaatgaggacgacacagaatctggtttgtta
ctgaatttcctttctcaactgaaagaagaaaaggagatgcaggctgccaagttatcagca
gatcttgcaagcttgcaaactgatattgtagaggctgatagaagacactcgttaaggatg
gggttcactttagaggacatggatgtactggcaagttctaatgatgtgccaggcacttca
tcaaatgccttgagaggaggggccttgttatcaggtgcgataccgccatcagtcaggtca
agcatatacgaggagagggtgatgaggaatctggagcagcttgaaaatgcatattactcc
atgaggtccaccattgacacatcggatactaatgtaattaagcgtcctgataatgatgct
ttgagggtccgtgaaaacttctcccaacttcacagtgacaccgatgttatggatgggcaa
acagaccgccttgggtgcttttttgatggtctatgcaaatatgcccgtcatagtaggttt
gaagtacgagggattttgaagaacgctgatatacttagctcgccaaatgtgatttgctct
ttgagttttgaccgagatgaagaatattttgctactgctggggtttcaaagaaaatcaaa
atatttgaattcaatgctcttttgaatgatcgtgttgacattcattatcctttagtagag
atgcctagtaagtccaagcttagttgtgtctcttggaacaactatataaagaactacttg
gcatcaacagactatgatggcactgttcagctatgggatgcaagcactggccaaggattc
acacagtttaccgagcatcggaaaagagcttggtctgtgagtttctcagaggtggatcca
actaaattggcaagtgggagtgacgactgttgtgtgaaagtgtggagtattaaccagaaa
aattgcgtcgacacaataagaaatgtggccaacgtatgctgcgtacagttctctccatac
tcctctcgcatgttagcttttggctcagctgattacaagacatactgttatgatctgagg
catactaggatcccctggtgtaccatttctggacatgggaaagctgtcagctatgtaaga
ttcttggatccagaaacgcttatatctgcatcaactgacaacaccttgaagatatgggat
ctcaaccagactaatcccagtggcttatctactaatgcttgcagtctgacattgagtggt
cataccaatgagaagaattttgtcggattatctgttcatgatggatacataacgtgtggt
tctgaaaacaacgaagtatattcttactacaaaacctttcccatgccaataacttctcat
aagtttggttcgatcgacccaataactggacaagagacaaacgatgataaccagcaattt
gtgtcgagtgtctgctggagagggaggtcaaatatggtggtggctgccaactctagtggg
agcattaaagttcttgagcttgtttga
DBGET
integrated database retrieval system
