Lolium rigidum (rigid ryegrass): 124707144
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Entry
124707144 CDS
T09103
Name
(RefSeq) DNA damage-binding protein 1-like isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03420
Nucleotide excision repair
lrd04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124707144
09124 Replication and repair
03420 Nucleotide excision repair
124707144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lrd04121
]
124707144
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124707144
Ubiquitin system [BR:
lrd04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
124707144
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
124707144
TCR (transcription coupled repair) factors
Cul4-CSA complex
124707144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
124707144
NCBI-ProteinID:
XP_047094765
LinkDB
All DBs
Position
4:224088468..224097235
Genome browser
AA seq
1090 aa
AA seq
DB search
MSKWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMVDAPIYG
RIAMLELFRPHNETQDFIFIATERYKFCVLKWDGEKSELLTISMGDVSDPLGCPTDNGQI
GIVDPEFRLIGLHLYDGLFKVIPFDNKELLTEAFDIRLEELQVLDIKFLYGCVKPTIVVL
YQDNRDARHVKTYEVALKDKDFVEGPWSENNLDNGAGLLLPVLAPLGGVIIVGEETIVYC
NGNSTLKAVPIKQSIIRAYGRVDPDGPRYLLGDNTGTLHLLVLTQEGERVTGLKIEHLGE
TSIASSISYLHNGVVYVGSRFGDSQLVKLNLLPDATGSFVEVLERYANLGPIVDFCVVDL
DRQGQGQVVTCSGAFKDGSVRVVRNCIGINEQASVALQGISGLWSLKSSFSDPYDMYLVV
SFISETRFMAMNMEDVLEETEIEGFDAQTQTLFCQNGISDLLIQITANSVRLVSCTSREL
VDQWNAPEGFSVNVASANASQVLLATGSGHVIYLEIRDAKLVEVKHAQLEHDVSCVDLNP
VGENPQYSSLAAIGLWTGISVSTYSLPDLELIRKENLGGEIVPRSVLLCTLEGVSYLLCA
LGDGHLFSFLLNASTGELTDRKKVSLGTQPITLRTFSSMGTTHVFASSDKPTVIYSSNKK
LLYSNVNLKGVNHMCPFSTAAFPDSLAIAKQSEFSIGTMGDIRNKKLRTIPLNEQPKRIC
HQEQSRTLAVSSFKYNLDSKEENEAHFIRLLDHQTFEFLFTHPLDQHECGCSMISCSFSD
DNKFYYCVGTSYVLPDEYEPAKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAA
INQKVQLYKWMTREDGLHELQSECSHRGHVLALCTQTRGDFIVVGDLMKSISLLVYKHEE
SAIEELARDYNANWMTAVEMIDDDIYLGAENSYNLFTVRKSSDPARDGVRGRLEVVGEYH
LGEYVSRFCHGSLVMHHPDSEMGQILTVIFSTTNGVIGIIASLPHDQYVFLEKLQATLVK
FIKGVGGLSHEQWRSFHNGKKTLDARNFLDGDLIESFLDLNRGKMEEVAEAMAVQVEELL
QRVEELTRLH
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagtggaactacgtcgtcacggcacacaagcccaccagcgtcagccactcctgc
gtcggaaacttcaccggcccgcaccagctcaacctcatcgtcgcgaaatgcacccgcatc
gagatccatctgctcactccacagggccttcagcctatggtagatgcaccgatatacgga
agaatcgcgatgcttgagctcttccgtcctcataatgagactcaggacttcattttcatc
gctacggaaagatacaagttctgtgtcctaaagtgggatggggaaaaatcggagcttctc
accatatccatgggagatgtttctgatccccttggctgccctacggacaatggacagatt
gggattgttgaccctgagtttaggcttattggtcttcacctctacgatggattatttaaa
gtcataccttttgacaacaaagaactgctgacggaagcttttgatatcagactagaagag
cttcaagtattggacatcaagttcctgtatggctgtgtcaaacctacaatagttgtcctc
taccaggataacagagatgcaaggcatgttaagacatatgaagttgcactgaaggacaaa
gacttcgttgagggtccttggtcagagaacaatttggacaatggtgctggtcttttatta
cctgtactggctccacttggtggtgttataattgttggtgaggagacaatagtttactgc
aatggaaattctacattaaaagctgtacccattaaacaatccatcataagagcttacgga
cgggttgacccagatggtccccgctatttacttggtgataatacaggcactttgcattta
cttgtgcttacccaagaaggagaaagggtaactggtttaaaaattgagcacttgggagag
acttcaattgcatcatcaatatcgtatcttcataatggtgttgtctatgttggttctcga
tttggtgattcacagctcgtaaagctgaatctcctacctgatgcaactggttcgtttgtt
gaagttcttgaacgatatgcgaatcttggacccattgtagacttctgtgtggttgacctt
gataggcaggggcaaggtcaggtggtcacttgttcaggagcatttaaagatggatcagtt
cgggtggttcgtaattgtattgggattaacgagcaggcttcagttgcgctgcaaggaatc
agtggattatggtcattgaaatcttccttcagtgatccatacgacatgtacctggtggtg
agctttataagcgagacacgattcatggctatgaacatggaagatgtattagaagaaaca
gagatagaaggctttgatgcacaaacccagactttgttttgccaaaatggcatcagtgat
ctgcttatacagattactgctaattctgttcggttagtcagttgcacttcccgggagcta
gtggatcaatggaatgcaccagaaggattttcagtcaatgttgcatcagctaatgccagc
caggtcctgttggcaaccggcagtggccatgttatttacctagagattagggatgctaag
ctggttgaagtgaaacatgcacagctagaacatgatgtctcctgtgttgatttgaaccca
gttggcgagaacccacagtatagttctctagctgctattggtttgtggactggtataagt
gttagtacatattcacttccagaccttgaattaatcaggaaggagaatttaggtggagaa
atagttcctcggtctgttctgctatgcaccttggaaggggtttcgtatttgctttgtgct
cttggagatggccacctgttcagttttcttttaaatgcaagtacaggtgaactaactgat
agaaagaaggtttctcttggtacccaaccaattacccttcgtacattctcatcgatgggt
acaactcatgtgtttgcttcatctgataaaccgaccgttatctatagcagcaataagaag
ctgctgtatagcaatgtcaatttgaaaggagttaatcacatgtgccctttcagtacagcc
gcttttccggacagccttgcaattgctaaacaaagtgaattttctattggaactatgggt
gatatccgaaacaagaagctccgcacgataccgttgaatgaacaaccaaagcgtatttgc
caccaggaacagtccaggacactggcggtctccagtttcaagtacaacctagacagtaag
gaggaaaacgaggcacattttattcgtctgttggatcatcaaactttcgagtttctgttt
acacatccacttgatcaacatgagtgcggttgctccatgattagctgctcattctcagat
gataataaattctattattgtgtgggaacatcatatgttttacctgacgagtacgaacca
gcaaagggccggatcctcgtatttgcagttgaagatggaaggttgcaattaatagtagaa
aaagaaacgaaaggagctgtctattctctaaatgcattcaatgggaaactgttggcagct
atcaatcagaaggtccaattatataagtggatgacacgggaggatggtttgcatgagctg
caatctgagtgcagccatcgtggacacgtactggccttgtgtacccaaacccgtggcgat
ttcattgtggttggagacctgatgaaatcgatatccttgcttgtatacaagcatgaggag
agtgcaatcgaagagcttgctagggattacaacgcaaactggatgactgcggttgagatg
atcgatgatgatatctacctcggtgcagagaatagctataacctcttcactgtccgcaag
agcagtgatccggccagagatggagtgaggggcaggcttgaggttgtcggggagtaccac
cttggagagtatgtgagcaggttctgtcacggttcacttgtgatgcaccacccagactct
gagatgggccagatcctcacggtcatcttcagcacaacaaacggggtcatcggcatcatc
gcctccctgccccatgaccagtatgtgttcctcgagaagctccaagcgaccctggtgaag
ttcataaagggcgtcggtggcctcagccacgagcagtggcggtcgttccacaatggcaag
aagacgttggatgcccgcaacttcctggacggcgacctgatcgagtcgttccttgacctt
aacagaggcaagatggaggaggtggctgaggcgatggcggtccaggtggaggagctgctc
cagagggtggaagagctgacgagactgcactaa
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