Lolium rigidum (rigid ryegrass): 124707380
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Entry
124707380 CDS
T09103
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124707380
03036 Chromosome and associated proteins [BR:
lrd03036
]
124707380
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
124707380
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
124707380
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
Spt6_S1
HHH_9
HTH_44
SH2
Tex_central_region
Tex_N
HHH_3
Motif
Other DBs
NCBI-GeneID:
124707380
NCBI-ProteinID:
XP_047094992
LinkDB
All DBs
Position
4:240564661..240573654
Genome browser
AA seq
1637 aa
AA seq
DB search
MGLGRTVVSDDEEEDFIEAEEEEDEPRPSRRGRDDVDEQDDDDDEEDEEEEGQNEYEKDG
FIVDDADEDEEEEEEEARASDDERRKKKKKKKRESEDFELDEDDYMLLQDNNITGIHRPK
PAGNKFKRLKKAGRESEMGEHSGFSDDNASGKRRTAEEKVQYSLFGNEEPFEEDIVEEDQ
QADEDDVAEDDMDDEMADFIVDEEEIDGNGQVVKRKKVKRKPLRQAAGVSSSALQEAHDI
FGDVDELLALRKQELERDAINSGEMRGNRLEDEFEPFILAEKYMTPKDEQIKENDVPERI
QLSEELTGNPPGLEENSRREEESVWIHHQLTGDGFLSFFGNERANKEIEQTDIVNVLYML
HVNKFEIPFIAMYRKESCPSLLDHDVHEPEYKEGKREMKWHKLLWAVQTLDRKWLLLQKR
KLALQIYYEXRFEEEKRRIDDVTRQTLNRQLYYSIIEALNDAKSEKEVEDVDAKFNLHFP
PGEVEELGQFKRPKRKSLYSICHKAGLWEVANQFGRSAEQLGHHLTLTSVPEAGELDSGK
DSPEDVATNFTCAMFETPQDVLRGARHMAAVEIGCEPIVKKHIRGIFMNKAVVTTKPTPE
GNLIIDPYHQLSGVKWLREKPLNKFVDAQWLLIQKAEEEKLLKVTISLPEDAKKELMSEA
RENYLSDCVSKSAQLWDEQRKMILDDAFLNFLLPSMEKEARALLTAKAKSCLHMEYGQQF
WNKVSVAPWKKKDSDKKDADLDLDDESELRVMACCWGPGKPATTFVMLDSSGELVDVLYA
GSLSIRSQGVAEQQRKKNDQQRVLKFMTDHSPQVVCVGASNLNCRQLKDDIYEVIFKIVE
DHPRDVNPQMENFSIVYGDESVPRLYENSRISSDQLPGQSAIVKRAVALGRYLQNPLAMV
ATLCGPGKEILSWKLHPLDQFLTPDEKYEVVEQVMVDATNQIGFDVNLAASHEWHFSTLQ
FVAGLGPRKASALQKELVREGSIFSRKELVKPLGRKVFMNASGFLRVRRSGAAAGSAQII
DLLEDTRIHPESYALAKNLAKDVQSEDADEVNEMDDDEQEMAIEHVREKPKKLVSLEIDE
YMKSIPEESRKRETLYDIREELLRGFSDWRIGYAEPSPDEEFWLLSGETEDNITDGRIVQ
VTVRNIQENRIMCTFDSGLKAIVMGDNYSDEGYDPESLQLHEGDVLTGKIKNVNKNRFIV
YLTCKISELKRRPFSRNNHDPYYHEEDIIPSQNDKIRKQKELAKKHYKPRMIVHPHFQNF
TAEEAMQFLGDKEPGEKVIRPSSRGPSFLTLTLKIFDGVFAHKEITESGKDHKDITSLLR
LGKTLTIDNETFEDLDEVIDRYVDPLVGHLKSMLSYRKFRKGLKGEVDEMLRAEKTENPM
RIVYCFGISHEHPGTFILSYIRSTNPHHEYVGLYPKGFRFRKKDFDSIDRLVSYFQKHID
KPPPESGMSMRNVAAMVPMKNSDWGSGGANDGWRGDGDNGRDRPFSGRSGGRFDSRDSSG
GRGRGRGRGRGRGNFGSDDGGGGGGNSGWTDNIGSGGGAWGSGGGSGSGDPGWGGGGGDN
NRGGGGDGGWGAPAAASDAGGGGWGAPAAASDAGGGWGAAAPAGSGAGDDSGWGSAKKAV
PAQDGGSGGWGTGGGGW
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgggattgggacgcacggtggtgtccgacgacgaagaagaggactttatcgaggctgag
gaggaggaggatgaaccgcggccgtcacggaggggcagggatgatgtcgacgagcaggac
gacgacgatgatgaggaggacgaggaagaggagggacagaatgaatatgagaaggatggc
ttcatcgtcgatgacgcggatgaggatgaagaggaggaggaagaggaagcaagagcaagt
gatgatgaaagacgcaagaagaaaaagaaaaagaagagggaatcagaggattttgagctt
gatgaggatgactacatgttgctccaggataataacatcactggcatccatcgtccgaag
cctgctggaaacaaatttaagcggttgaagaaggcaggaagggaatctgaaatgggtgag
cattctggcttctctgatgacaatgcatcgggtaaaaggcgtaccgccgaggagaaagtt
cagtattccttgttcggaaatgaagagccctttgaggaggatattgtcgaggaggatcag
caagcagatgaagatgatgttgctgaagatgacatggatgatgaaatggctgacttcatt
gtggacgaagaggaaattgatgggaatggccaagttgtgaaaaggaagaaggttaaaaga
aagcctcttagacaagctgcaggtgtttcatcatctgctttgcaagaggcccatgatata
tttggggatgttgatgagcttttagcactaagaaagcaagagcttgagagggatgctatt
aattctggcgagatgagaggaaacaggcttgaagatgagtttgagccatttattcttgca
gagaagtatatgacaccgaaggatgagcaaatcaaagaaaatgatgtacctgagaggatc
cagctgtctgaggaattaactggtaatcctccgggtctagaggagaattcaaggagggag
gaagagagtgtatggatacaccaccaactcactggtgatggatttctctccttttttggc
aatgagcgtgcgaacaaggagattgaacagactgacattgtgaatgtcttgtatatgcta
catgtcaacaaatttgaaatcccattcattgcaatgtataggaaggaaagctgcccaagt
ctgttggaccatgatgtccatgaaccagagtataaagaaggcaaacgtgaaatgaagtgg
cataagctgctttgggctgttcagaccttagacaggaagtggctacttctgcagaagcgc
aagcttgctttgcagatttattatgaanaacgattcgaggaagagaaacgaagaatagat
gatgttacaaggcagacactcaatcggcagctttattactctattattgaagcactaaat
gatgcaaaatctgagaaagaggtggaagatgtggacgcgaagttcaatctacattttcct
cccggcgaagttgaagagttaggtcaatttaagcgaccgaaaaggaaatccctatacagt
atttgtcacaaggcagggctgtgggaggttgctaaccaatttggccggagtgctgagcaa
ttaggccaccatctaactttaacgagcgtacctgaagcgggcgagcttgacagcgggaaa
gattctcctgaagatgttgctacaaatttcacatgtgcaatgtttgaaactccacaagat
gttcttcggggtgccagacacatggcagctgttgagatcggctgtgagcctattgtaaaa
aagcatatcaggggtatcttcatgaacaaggctgttgtcacaacaaagcccacacctgag
ggcaatttgatcatagatccctaccaccaactatcaggtgttaaatggctgcgagagaaa
ccactaaacaagtttgtagatgcacagtggcttcttattcagaaagcagaggaagaaaag
ctcctcaaggttaccatatcattaccagaggatgcaaagaaagagctcatgtctgaggct
cgtgagaattatctaagtgactgtgtcagcaagtctgcacaattgtgggatgagcaacgg
aagatgatactggatgatgccttcctcaattttcttcttccatcaatggaaaaggaagct
cgagcgctgttgacagcaaaagccaaaagttgtctccatatggaatacggacagcagttc
tggaacaaggtttctgttgctccatggaagaagaaggattctgacaagaaggatgctgac
cttgatctggatgatgaatcagagctgagagttatggcctgctgctggggtcctgggaag
ccagcaaccacgtttgtaatgttagactcatcaggagaattggtggatgttttgtatgct
ggttctctcagtattagatctcaaggcgttgctgagcagcagcggaagaagaacgatcag
cagagggttttgaagttcatgactgaccattcaccgcaagttgtatgtgtaggagcatca
aatttgaattgcagacaactcaaggatgatatctatgaggttatttttaaaatcgttgaa
gatcatccaagagatgtgaacccgcaaatggaaaattttagcattgtctatggtgatgaa
tccgtgcctcggttgtacgagaactctcgcatatcttcagatcagctgcctggccagtca
gctatcgtgaagcgtgcggtggcgcttggtcggtacttgcagaatcctttggcgatggtt
gcaacactctgtggacctgggaaagagatactgtcatggaaactccacccccttgatcag
ttccttactcctgatgagaagtatgaagttgttgagcaagtaatggtcgatgctacaaat
cagattggctttgatgttaatcttgctgctagtcacgagtggcatttttccactttacaa
tttgttgctggtctggggccacgtaaagcttcagcgttgcagaaagaattggtgagagag
ggatccatctttagtcgcaaggagctggtaaaacctcttggaaggaaggtattcatgaat
gcgtctgggtttttacgtgtccgacgaagtggtgcagctgcaggcagtgctcaaatcatt
gatctgcttgaggatacaaggatccatcctgaatcatatgcgttagcaaagaatttggcc
aaggatgtccagtccgaggacgcagatgaagtgaatgagatggatgatgatgagcaagag
atggcaattgagcatgtaagagagaagccaaaaaaacttgtgagtcttgagatcgatgaa
tacatgaagagtattccggaggagtctcgtaaaagggaaacattgtatgacattagggaa
gagctactgcgtggcttttctgactggaggatcggctatgctgagccaagtccagatgag
gaattctggttgctttctggtgaaactgaggataacataacagatggaaggattgttcaa
gtaactgtccgtaacatacaagagaaccgaataatgtgcacatttgattctggtttgaaa
gccatagttatgggagacaattattctgatgaaggctatgatccagaatcacttcagttg
catgaaggtgacgtattaactggcaaaattaagaatgtgaacaaaaataggttcatagtt
tacctaacatgcaagatctctgaattgaagagaaggcctttctccagaaacaatcatgat
ccgtactatcatgaagaagatatcattccaagccagaatgataagatccggaaacagaag
gaacttgcaaagaaacattacaagcctcggatgattgttcatcctcactttcagaacttc
acagcagaagaagcaatgcagttcttgggagacaaagagcctggtgagaaggtcattcgg
cctagttctaggggcccatcatttctaacacttaccttgaagatatttgatggtgtcttc
gcacataaggagataactgaaagtggcaaggatcataaagatattacaagtttacttcgc
cttggaaagacgctgaccattgataatgaaacttttgaagatcttgacgaggtaatagac
agatatgtggatccattggtaggtcacctgaaaagcatgctctcctatcgtaaattcagg
aaggggttaaaaggagaggttgatgaaatgttaagggcagagaagacagagaatcctatg
agaatagtctattgttttggcatatcccatgaacatccaggcacctttatattatcctac
attaggagcacaaacccacatcatgagtatgtagggttatacccaaagggcttcagattc
cggaagaaggattttgacagcatcgatcgccttgtgtcatatttccagaaacacattgac
aaaccaccaccggaatctggcatgtcaatgcgaaatgttgctgcaatggttcctatgaag
aattcagattggggttctggtggtgctaatgatgggtggaggggagatggtgacaatggt
agggacagacctttctctggaagatcaggaggtaggtttgattcaagggacagctctggt
ggccgtggtcgtgggcgcgggcgcgggcgtggacgaggtaacttcggcagcgatgatggt
ggtggtggcggcggcaacagtggttggactgataacattggcagtggtggaggtgcatgg
ggctctggcggaggatctggaagtggagatcccggatggggcggcggcggtggtgacaat
aaccgtggcggcggtggagatggaggctggggtgcacctgcagctgcctcagacgctggt
ggtggaggctggggagcacctgccgctgcctctgatgctggtggaggttggggagcagct
gctcctgctggctctggtgctggtgatgactcgggatggggcagcgccaaaaaggcggtt
ccagcacaagatggcggaagtggtggttggggtaccggtggtgggggctggtga
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integrated database retrieval system
