Lolium rigidum (rigid ryegrass): 124707441
Help
Entry
124707441 CDS
T09103
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124707441
03036 Chromosome and associated proteins [BR:
lrd03036
]
124707441
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
124707441
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
124707441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
Spt6_S1
HHH_9
HTH_44
SH2
Tex_central_region
Tex_N
HHH_3
Motif
Other DBs
NCBI-GeneID:
124707441
NCBI-ProteinID:
XP_047095051
LinkDB
All DBs
Position
4:246251029..246259994
Genome browser
AA seq
1635 aa
AA seq
DB search
MGLGRTVVSDDEEEDFIEAEEEEDEPRPSRRGRDDVDEQDDDDDEEDEEEEGQNEYEKDG
FIVDDADEDEEEEEEEARASDDERRKKKKKKKRESEDFELDEDDYMLLQDNNITGIHRPK
PAGNKFKRLKKAGRESEMGEHSGFSDDNASGKRRTAEEKVQYSLFGNEEPFEEDIVEEDQ
QADEDDVAEDDMDDEMADFIVDEEEIDGNGQVVKRKKVKRKPLRQAAGVSSSALQEAHDI
FGDVDELLALRKQELERDAINSGEMRGNRLEDEFEPFILAEKYMTPKDEQIKENDVPERI
QLSEELTGNPPGLEENSRREEESVWIHNQLTGDGFLSFFGNERANKEIEQTDIVNVLYML
HVNKFEIPFIAMYRKESCPSLLDHDVHEPEYKDGKREMTWHKLLWAVQTLDRKWLLLQKR
KLALQIYYEKRFEEEKRRIDDVTRQTLNRQLYYSIIEALNDAKSEKEVEDVDAKFNLHFP
PGEVEELGQFKRPKRKSLYSICHKAGLWEVANQFGRSAEQLGHHLTLTSVPEAGELDSGK
DSPEDVATNFTCAMFETPQDVLRGARHMAAVEIGCEPIVKKHIRGIFMNKAVVTTKPTPE
GNLIIDPYHQLSGVKWLREKPLNKFVDAQWLLIQKAEEEKLLKVTISLPEDAKKELMSEA
RENYLSDCVSKSAQLWDEQRKMILDDAFLNFLLPSMEKEARALLTAKAKSCLHMEYGQQF
WNKVSVAPWKKKDSDKKDADLDLDDESELRVMACCWGPGKPATTFVMLDSSGELVDVLYA
GSLSIRSQGVAEQQRKKNDQQRVLKFMTDHSPQVVCVGASNLNCRQLKDDIYEVIFKIVE
DHPRDVNPQMENFSIVYGDESVPRLYENSRISSDQLPGQSAIVKRAVALGRYLQNPLAMV
ATLCGPGKEILSWKLHPLDQFLTPDEKYEVVEQVMVDATNQIGFDVNLAASHEWHFSTLQ
FVAGLGPRKASALQKELVREGSIFSRKELVKPLGRKVFMNASGFLRVRRSGAAAGSAQII
DLLEDTRIHPESYALAKNLAKDVQSEDADEVNEMDDDEQEMAIEHVREKPKKLESLEIDE
YMKSIPEESRKRETLYDIREELLRGFSDWRIQYAEPSPDEEFWLLSGETEDNITDGRIVQ
VTVRNIQENRIMCTFDSGLKAIVMGDNYSDEGYDPESLQLHEGDVLTGKIKNVNKNRFIV
YLTCKISELKRRPFSRNNHDPYYHEEDIIPSQNDKIRKQKELAKKHYKPRMIVHPHFQNF
TAEEAMQFLGDKEPGEKVIRPSSRGPSFLTLTLKIFDGVFAHKEITESGKDHKDITSLLR
LGKTLTIDNETFEDLDEVIDRYVDPLVGHLKSMLSYRKFRKGLKGEVDEMLRAEKTENPM
RIVYCFGISHEHPGTFILSYIRSTNPHHEYVGLYPKGFRFRKKDFDSIDRLVSYFQKHID
KPPPESGMSMRNVAAMVPMKNSEWGSGGANDGWRGDGDNGRDRPFSGRSAGGRFDSRDSS
GGRGRGRGRGRGRGNFGSDDGGNSGGWTDNIGSGGGAWGTGGGSGSGDPGWGAGGGDNNR
GGGGDGGWGAPAAASDAGGGGWGAPAAASDAGGGWGAAAPAGSGAGDDSGWGSAKKAVPA
QDGGSGGWGTGGGGW
NT seq
4908 nt
NT seq
+upstream
nt +downstream
nt
atgggattgggacgcacggtggtgtccgacgacgaagaagaggactttatcgaggctgag
gaggaggaggatgaaccgcggccgtcacggaggggcagggatgatgtcgacgagcaggac
gacgacgatgatgaggaggacgaggaagaagagggacagaatgaatatgagaaggatggc
ttcatcgtcgatgacgcggatgaggatgaagaggaggaggaagaggaagcaagagcaagt
gatgatgaaagacgcaagaagaaaaagaaaaagaagagggagtcagaggattttgagctt
gacgaggatgactacatgctgctccaggataataacatcactggcatccatcgtccaaag
cctgctggaaacaaatttaagcggctgaagaaggcaggaagggaatctgaaatgggtgaa
cattctggcttctctgatgacaatgcatcgggtaaaaggcgtaccgccgaggagaaagtt
cagtattccttgtttggaaatgaagagccctttgaggaggatattgtcgaggaggatcag
caggcagatgaagatgatgttgctgaagatgacatggatgatgaaatggctgatttcatt
gtggatgaagaggaaattgatgggaatggccaagttgtgaaaaggaagaaggttaaaaga
aagcctcttagacaagctgcaggtgtttcatcatctgctttgcaagaggcccatgatata
tttggggatgttgatgagcttttagcactaagaaagcaagagcttgagagggatgctatt
aattctggggagatgagaggaaacaggcttgaagatgagtttgagccatttattcttgca
gagaagtatatgacaccgaaggatgagcaaatcaaagaaaatgatgtacctgagaggatc
cagctgtctgaggaattaactggtaatcctccgggtctagaggagaactcaaggagggag
gaagagagtgtatggatacacaaccaactaactggtgatggatttctctccttttttggc
aatgagcgtgcgaacaaggagattgaacagactgacattgtgaatgtcttgtatatgcta
catgtcaacaaatttgaaatcccattcattgcaatgtataggaaggaaagctgcccaagt
ctgttggaccatgatgtccatgaaccagagtataaagatggcaaacgtgaaatgacgtgg
cataagctgctttgggctgttcagaccttagacaggaagtggctacttctgcagaagcgc
aagcttgctttgcagatttattatgaaaaacgattcgaggaagagaaacgaagaatagat
gatgttacaaggcagacactcaatcggcagctttattactctattattgaagcactaaat
gatgcaaaatctgagaaagaggtggaagatgtggacgcgaagttcaatctacattttcct
cctggcgaagttgaagagttaggtcaatttaagcgaccgaaaaggaaatccctatacagt
atttgtcacaaggcagggctgtgggaggttgctaaccaatttggccggagtgctgagcaa
ttaggccaccatctaactttaacgagcgtacctgaagcgggcgagcttgacagcgggaaa
gattctcctgaagatgttgctacaaatttcacatgtgcaatgtttgaaactccacaagat
gttcttcggggtgccagacacatggcagctgttgagatcggctgcgagcctattgtaaaa
aagcatatcaggggtatcttcatgaacaaggctgttgtcacaacaaagcccacacctgag
ggcaatttgatcatagatccctaccaccaactatcgggtgttaaatggctgcgagagaaa
ccactaaacaagtttgtagatgcacagtggcttcttattcagaaagcagaggaagaaaag
ctcctcaaggttaccatatcattaccagaggatgcaaagaaagagctcatgtctgaggct
cgtgagaattatctaagtgactgtgtcagcaagtctgcacaattgtgggatgagcaacgg
aagatgatactggatgatgccttcctcaattttcttcttccatcaatggaaaaggaagct
cgagcgctgttgacagcaaaagccaaaagttgtctccatatggaatacggacagcagttc
tggaacaaggtttctgttgctccatggaagaagaaggattctgacaagaaggatgctgac
cttgatctggatgatgaatcagagctgagagttatggcctgctgctggggtcctgggaag
ccagcaaccacgtttgtaatgttagactcatcaggagaattggtggatgttttgtatgct
ggttctctcagtattagatctcaaggcgttgctgagcagcagcggaagaagaacgatcag
cagagggttttgaagttcatgactgaccattcaccgcaagttgtatgtgtaggagcatca
aatttgaattgcagacaactcaaggatgatatctatgaggttatttttaaaatcgttgaa
gatcatccaagagatgtgaacccgcaaatggaaaattttagcattgtctatggtgatgaa
tccgtgcctcggttgtacgagaactctcgcatatcttcagatcagctgcctggccagtca
gctatcgtgaagcgtgcggtggcgcttggtcggtacttgcagaatcctttggcgatggtt
gcaacactctgtggacctgggaaagagatactgtcatggaaactccacccccttgatcag
ttccttactcctgatgagaagtatgaagttgttgagcaagtaatggtcgatgctacaaat
cagattggctttgatgttaatcttgctgctagtcacgagtggcatttttccactttacaa
tttgttgctggtctggggccacgtaaagcttcagcgttgcagaaagaattggtgagagag
ggatccatctttagtcgcaaggagctggtaaaacctcttggaaggaaggtattcatgaat
gcgtctgggtttttacgtgtccgacgaagtggtgcagctgcaggtagtgctcaaatcatt
gatctgcttgaggatacaaggatccatcctgaatcatatgcgttagcaaagaatttggcc
aaggatgtccagtccgaggacgcagatgaagtgaatgagatggatgatgatgagcaagag
atggcaattgagcatgtaagagaaaagccaaaaaaacttgagagtcttgagatcgatgaa
tacatgaagagtattccggaggagtctcgtaaaagggaaacattgtatgacattagggaa
gagctactgcgtggcttttctgactggaggatccaatatgctgagccaagtccagatgag
gaattctggttgctttctggtgaaactgaggataacataacagatggaaggattgttcaa
gtaactgtccgtaacatacaagagaaccgaataatgtgcacatttgattctggtttgaaa
gccatagttatgggagacaattattctgatgaaggctatgatccagaatcacttcagttg
catgaaggtgacgtattaactggcaaaattaagaatgtgaacaaaaataggttcatagtt
tacctaacatgcaagatctctgaattgaagagaaggcctttctccagaaataatcatgat
ccgtactatcatgaagaagatatcattccaagccagaatgataagatccggaaacagaag
gaacttgcaaagaaacattacaagcctcggatgattgttcatcctcactttcagaacttc
acagctgaagaagcaatgcagttcttgggagacaaagagcctggtgagaaggtcattcgg
cctagttctaggggcccatcatttctaacacttaccttgaagatatttgatggtgtcttc
gcccataaggagataactgaaagcggcaaggatcataaagatattacaagtttacttcgc
cttggaaagacgctgaccattgataatgaaacttttgaagatcttgacgaggtaatagac
agatatgtggatccattggtaggccacctgaaaagcatgctctcctatcgcaaattcagg
aaggggttaaaaggagaggttgatgaaatgttaagggcagagaagacagagaatcctatg
agaatagtctattgttttggcatatcccatgaacatccaggcacctttatattatcctac
attaggagcacaaacccacatcatgagtatgtagggttatacccgaagggcttcagattc
cggaagaaggattttgacagcatcgatcgccttgtgtcatatttccagaaacacattgac
aaaccaccaccggaatctggcatgtcaatgcgaaatgttgctgcaatggttcctatgaag
aattcagaatggggttctggtggtgctaatgatgggtggaggggagatggtgacaatggt
agggacagacctttctctggaagatcagcaggaggtaggtttgattcaagggacagctct
ggtggccgtggtcgtgggcgcgggcgcgggcgtggacgaggtaactttggcagtgatgat
ggtggtaacagtgggggttggactgataacatcggcagtggtggaggtgcatggggcact
ggcggaggatctggaagtggagatcccggatggggcgctggcggtggtgacaataaccgt
ggcggcggtggagatggaggctggggtgcacctgcagctgcctctgacgctggtggtgga
ggctggggagcacctgccgctgcctctgatgctggtggaggttggggagcagctgctcct
gctggctctggtgctggtgatgactcgggatggggcagcgccaaaaaggcggttccagca
caagatggcggaagtggtggttggggtaccggtggtgggggctggtga
DBGET
integrated database retrieval system
