Lolium rigidum (rigid ryegrass): 124707629
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Entry
124707629 CDS
T09103
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124707629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lrd04121
]
124707629
Enzymes [BR:
lrd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
124707629
Ubiquitin system [BR:
lrd04121
]
Ubiquitin ligases (E3)
HECT type E3
124707629
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
HEAT_EZ
Htt_N-HEAT_1
Adaptin_N
HEAT
RGM_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
124707629
NCBI-ProteinID:
XP_047095257
LinkDB
All DBs
Position
4:261819003..261826177
Genome browser
AA seq
1355 aa
AA seq
DB search
MLLAVRAITYLCDAMPRAADAVVRHGLLPVLCSRLLAIEYLDVAEQCLQAFEKISRRKPT
QCLQAGMITAVLAYIDFFASSIQRVAVSAVANVCKKIPTECSQFVIDSVPMLCNLLQSED
KMVVEKVATCLISIVDSFSGSVELLDQLCHQGVVEKVLPLINTSGITSLSPSTCSNLIGL
LAKLACTSLVAVKSLFELNVGSTIRGILVSSDLSHGMPYLPSENQNNQVNEALKLAIQLI
PSVARDVEDTHMVLAKEKIIVDEPRFLCQFSRDILPVLIKAVNSGANSYICYGCSSVVNN
ICYFSKPEMLQDLLKETNISSFLAGLLSRKDHHVLISSLKIIEILMQKLPDAYLGSFIKE
GVVYAVEALLMQDDCSKSSPSDGTEQSENQPAIRSKPTCFCYAFDSRRSESAETRTCRIG
QGNLFNFARHVKTTYFTAEAVSSEMGLTEILQKLKTCCAVLNDSADKSLNQDGLQNEEHL
SNILSEVMMELHGGETMTTFEFLESGLVKSLLNYLSNGIYLQVDDNLKDNNADHFYAVLK
RFQSFAHICFSRMEQGWGDMLLTLLVRKLQSALTSIDNFPVIMSHNFKPRNNISDIPIRH
STITPCIRVRFKKDEDETNLSSYDNAVNLEISSSLNSIEQFLWPKVSTSTSDQDTESSPS
SVASESKYTEDDPQERDSSPDSSPPSEGITRENQNSPVEPCAKKVSSSSAGGQPERNKVI
GTDRAVQPKLAFSLKGKELDRSVTLYQSILQDQINVGADVVLDTQFWYSVHDVTFRMAAN
PERDDCPDSSNAPISTNDSKTGLMWQALPSFSSLLLGKISCKIDKSSPSYDILFMLKVLE
GLNRFSFHLVSNERNHAFAQGRITNLDDLKPSVSSVPLQEFVSAKLTDKLEQQMHDPLVS
RSRCLPLWCTELMSTCPFLFSFEARWKYFQLTAFGSSSIQHGHMRDTSGNNIATERSPSF
SRKKFKVDRNDILVSAAKVMRSYARSNALLEVEYEEEVGTGLGPTMEFYTLISHEFQKSG
LGMWRGELPCEARTDKTHIGPRTVVAPNGLFPRPWSASVELPSEVKNRFHLLGLVLAKAI
KDGRILDIPFSKAFYKLILGQELNIYDINSFDPELATTLMEFKALTCQRKYLESCSTKEC
QSPSDLSYRGCTIEDLAIDFTVPGYPEYVLSLESSSDNVTAENLEEYVSFVVEATVKNGI
SRQLEAFKSGFSQVFPLSTLQVFSEDELERLLCGEQDNWDFVKLVDHIKFDHGYTSSSPA
VINLLEIIQEFGCHERRAFLQFITGSPRLPPGGLAALNPNLTVVRKHSNNDAEDDLPSVM
TCANYLKLPAYCSKERMREKLLYAITEGQGSFHLS
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atgctgctcgccgtgcgcgccatcacctacctctgcgacgccatgccgcgcgccgccgac
gccgtcgtgcgccacggcctgctccccgtgctctgctccaggctcctcgcgatcgagtac
ctcgatgtggctgagcagtgcttgcaggcctttgagaagatatcacgcaggaagccgaca
cagtgcttgcaggcgggcatgataaccgccgtgctggcctacattgacttcttcgcctca
agtattcagagggttgctgtctcagctgttgcgaatgtctgcaagaagatccccacagag
tgctcccagtttgtgatcgattcggtgccgatgctgtgtaatctgctgcagtctgaggac
aagatggtcgtggaaaaggttgcgacttgcttaataagcattgtggactctttcagtggt
tctgtggagcttcttgaccagctctgccaccagggcgtggtagagaaggtccttcctttg
atcaacaccagtggaatcacttcccttagtccgtcgacttgcagtaacttgatcgggctt
cttgctaagctagcctgtacttcacttgtggcagtcaagtctctctttgagttgaatgtt
ggtagcaccataagggggattctggtcagttcagatctctcccatgggatgccttacctg
ccttcagaaaaccagaataaccaggtcaatgaagctttgaaattagcaatccagcttatt
ccttctgtggcaagagatgttgaagacacccatatggtacttgcaaaagaaaaaataatt
gtggatgaaccgcggttcttgtgtcagttctctagggatattcttcctgtcttgatcaag
gcagtcaactctggtgcaaattcatacatttgctatggctgttcttcagttgtaaataac
atctgttacttcagtaagcctgaaatgcttcaagatttgctcaaggaaacaaacatatca
agcttcttggctggtttattgtcccggaaggatcatcatgtgctaatctcatcactaaag
attatcgagattctcatgcaaaagcttccggatgcttaccttggatcttttatcaaagaa
ggtgtggtctatgcggtagaggctcttcttatgcaagacgattgctcaaaatccagcccc
tctgatggcactgaacaatcagagaaccagcccgctataagaagtaaacctacatgtttc
tgctatgcatttgattcccgcagatccgagtctgccgaaacaagaacttgtaggattggg
cagggcaacctttttaattttgcaaggcatgtgaagacaacttactttacagctgaagca
gtgagttctgagatggggttaacagagattttgcagaagctcaaaacttgctgtgcagtt
ctgaatgactctgcagataagtcattaaaccaagacggtcttcaaaatgaagaacacttg
tctaacatcttgagtgaggtgatgatggagcttcacggaggagaaacgatgacaaccttt
gaattccttgagagtggactggtcaaatctttgttgaattacctgtctaatggcatatac
ctccaggtggatgacaatctcaaagacaacaatgctgaccatttttatgctgtgctaaaa
agatttcaatcatttgcccatatttgtttttcaagaatggagcaagggtggggtgatatg
ctcttgacactactagtaaggaaactacagagtgctcttacttctattgacaacttccca
gtgataatgagccataatttcaagccaaggaacaatatttctgatatccctattaggcac
tcaacaattactccatgtatccgagtacgtttcaagaaggacgaagatgaaacaaactta
tcaagctatgataatgctgtgaatttggaaatctcttcttccttgaattccattgaacaa
tttttgtggcccaaagtcagcacaagcacaagcgatcaggatactgaatcatcacctagt
agtgttgcttccgagagcaaatatactgaagatgatcctcaagaaagagattccagccca
gattcttctcctccatcagagggtatcaccagggaaaatcaaaattctcctgtagaacct
tgcgcaaagaaagtgtcctcatcctctgctgggggtcaaccagaaagaaacaaggtgatc
gggactgatcgcgctgtgcaaccaaaactggcatttagcctgaaaggaaaagagcttgac
cgatctgttactctttatcaatcaatcctgcaagatcagatcaacgtgggagctgatgta
gttttggacacccagttttggtacagtgtgcatgatgtaacatttcgaatggctgcaaat
ccagaaagagatgattgtcctgattcgtctaatgcaccaatatcaacaaatgacagtaaa
acagggttgatgtggcaggcactcccttccttcagcagcttgttgcttggcaagatttca
tgcaaaattgataagtcaagtccatcatatgacatattgtttatgctaaaagtcttagaa
ggattaaaccgattctcatttcacctcgtgtctaatgagagaaaccatgcttttgctcaa
ggaaggataactaaccttgatgatctgaagccttctgtttcttcagttccactgcaggag
tttgttagtgcaaaattgacagataaactggagcaacagatgcatgatcccttggtttca
aggtctcgctgtctacctttatggtgcactgaactgatgtccacatgccctttcttattt
tcttttgaggcacgatggaagtatttccagctgacagcatttggttcttcatcaatacaa
catgggcacatgagggatacaagtggaaacaatatagcaacggaaagaagcccgtccttt
tcacggaaaaagttcaaagttgatcgcaacgatatactggtttcagcagcaaaagtgatg
cgttcttatgctcggagtaatgcactgcttgaagtagaatatgaagaagaagtaggcaca
ggtttgggtcctacaatggaattctatacattgataagtcatgagtttcagaagtctggg
ttaggcatgtggaggggagagcttccttgtgaagctcgcactgacaaaactcacattggt
ccccgaactgtggtcgcgcctaatggactatttcctcgaccctggtctgcttctgtagaa
cttccttcggaagtaaaaaatagatttcacctccttggtttggttctcgcaaaggcaatt
aaagatggcagaattcttgacattccattctccaaagcattttacaagcttatcctagga
caggagcttaatatatatgatatcaattcatttgatcctgaactggcaacgacccttatg
gagtttaaagcacttacttgtcaaaggaaatacttagaatcatgttcgacaaaggaatgc
cagagcccatctgatttgtcttatcgaggttgtacaattgaggatcttgctattgacttc
actgtccctgggtatccagagtatgtgctttctctggagagtagctcagataatgtaacc
gctgagaatttggaagaatatgtttcttttgttgtcgaggcaacagttaaaaatggaatc
tcaagacaactggaagcttttaagtcaggatttagtcaggtatttccactaagcacactt
caggtattctcagaggatgagctggagagattactctgtggagaacaagacaattgggat
tttgtgaaacttgttgatcacataaaatttgatcatggctacacctccagcagccctgca
gtcatcaatttgttagagatcatacaagagttcggatgccatgagcgcagagctttcttg
caatttataacgggttcacctcgactccctccaggtggtttagctgcactgaatcctaat
ttgacagttgtccggaagcatagcaacaacgatgctgaggatgacctgccgagtgtgatg
acttgcgctaactatctcaagttacctgcctactgttcgaaggaaaggatgagggagaag
ctgctgtacgcaattacggaaggccaggggtccttccacctatcttga
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