Lolium rigidum (rigid ryegrass): 124707664
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Entry
124707664 CDS
T09103
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124707664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124707664
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124707664
U7-dependent histone pre-mRNA processing factors
124707664
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
124707664
NCBI-ProteinID:
XP_047095282
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Position
4:complement(265272163..265278980)
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AA seq
738 aa
AA seq
DB search
MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDHCDPAVLQPLARVAPTIDAVLL
SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDYFLSRWQVADFDLFTLDDID
AAFQNVVRLKYSQNHLLKDKGEGIVIAPHVSGHLLGGTVWKITKDGEDVIYAVDFNHRKE
RHLNGTALGSFVRPAVLITDAYNALNNQVYKRQQDQDFIDSMVKVLSNGGSVLLPVDTAG
RVLELLLIMEQYWAQRHLVYPIYFLTNVSTSTIDFVKSFLEWMSDSISKSFEHTRDNAFL
LRYVSLIINKEELEKLGDAPKVVLASMSSLEVGFSHDIFVDMANEAKNLVLFTEKGQFGT
LARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERVKKEEALKASLSKEEELKASQG
SNAKASAPMAVDASLSCKSSNAGSNVGGSVDILIDGFVPPATSVAPMFPFFENTADWDDF
GEVINPDDYMMKQDEMDNNLMLGAGDGMDGKLDEGSARLLLDSAPSKVISNEMTVQVKCS
LAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCAKNSDLHVYAPQLEET
IDVTSDLCAYKVQLSEKFMSNVISKKLGEHEIAWVDAEVGKVDEKLTLLPPSSTPSAHKP
VLVGDLKLADFKQFLANKGLQVEFSGGALRCGEYITVRKIGDSNQKGSTGSQQIVIEGPL
CEDYYKIRELLYSQFFLL
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggggacgtcggtgcaggtgacgccgctgagcggcgcgtacggcgagggccccctctgc
tacctgctcgccgtcgacggcttccgcttcctcctcgactgcggctggaccgaccactgc
gaccccgccgtgctccagcccctcgcaagggttgcgccaacaatagatgccgttcttctg
tctcaccctgacatgatgcatctgggagctttgccctatgctatgaaacatcttggatta
tctgcaccagtgtatgcgacagaacctgtgtttaggcttggacttttgactatgtatgat
tatttcctatctcgatggcaagttgcagactttgacttgttcactttggatgatatagat
gctgcattccagaatgtcgtcaggctgaaatactcacaaaaccaccttcttaaagataaa
ggtgaaggaatagtgattgcaccgcatgtgtctgggcatcttttgggtggtacagtatgg
aagataacaaaagatggggaggatgtcatctacgctgttgatttcaaccaccgaaaagag
agacatttgaatggtactgcccttggatcttttgtacggccagctgttttgattactgat
gcttacaatgccttgaacaatcaagtctacaaaaggcagcaggatcaagattttattgat
tcaatggtgaaagttctatcaaatggtggtagcgtgttactgcctgttgatacagccggt
agagtgctagaacttcttttaataatggagcagtactgggctcaacgacatttggtctat
cctatctactttctgacaaatgtttctacaagtactattgattttgtcaagagttttctt
gaatggatgagtgattcaatctcaaagtcttttgaacacactagagataatgccttttta
ttaagatatgtttcactgataattaacaaagaagagctggagaaactgggagatgctcca
aaggtggttctagcgtccatgtcaagcttggaggttggcttttctcatgacatatttgtt
gatatggcaaatgaagcaaaaaacctggtgctttttactgagaaaggacagtttgggact
cttgctcgcatgcttcaagtggatccaccccccaaagctgtaaaagtgactatgagcaaa
cgaattcctttagttggtgatgagctgaaagcttatgaagaggaacaagaacgggtaaaa
aaggaagaagcgctaaaggctagcctcagcaaggaggaggagctaaaggcttctcaggga
tcaaatgcaaaggcttctgctcccatggctgtcgatgcaagcttgtcttgtaaatcatcc
aatgctggctcaaatgttggcgggagtgtggatattctaattgatggatttgtccctccg
gcgaccagtgttgctcctatgtttcctttctttgaaaatactgctgactgggatgacttc
ggtgaggttatcaatcctgatgattatatgatgaaacaagatgaaatggataataatttg
atgctcggtgctggagatggtatggatggtaagcttgatgagggatcagcacgcctgctc
cttgattcagcaccatcaaaagtgatttcaaatgagatgacagtgcaagtgaagtgctca
ttggcatatatggactttgaaggtcggtccgatggccgttccgtaaaatcagttattgct
catgtggccccactgaaacttgttttggtgcatggatctgcagaagctactgaacatttg
aaaatgcattgtgcgaagaactcagacctgcatgtttatgctcctcagttagaagaaaca
attgatgtaacatcagatttatgtgcttacaaggtacaactttcagagaagttcatgagc
aatgtcatttctaagaagttaggtgagcatgaaattgcgtgggttgatgcagaagttggg
aaagtggacgagaagcttactttgctaccaccctcatcaactccatcagcccataaacca
gttcttgtcggtgatctgaaattggctgatttcaagcaattccttgcaaataaaggttta
caggtcgagttttctggcggtgctctacgttgtggcgagtacatcacggtgcgcaagatt
ggcgattctaaccaaaagggcagcacgggttctcagcaaatcgtgattgagggcccgctg
tgcgaggactactacaagatacgcgagctcctctactcgcagttcttcttgctgtaa
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