Lolium rigidum (rigid ryegrass): 124708107
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Entry
124708107 CDS
T09103
Name
(RefSeq) serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like
KO
K03456
serine/threonine-protein phosphatase 2A regulatory subunit A
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124708107
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lrd01009
]
124708107
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124708107
03036 Chromosome and associated proteins [BR:
lrd03036
]
124708107
Protein phosphatases and associated proteins [BR:
lrd01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
124708107
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
124708107
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
124708107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT
PPP2R1A-like_HEAT
HEAT_2
HEAT_EZ
Vac14_Fab1_bd
HEAT_EF3_N
Htt_N-HEAT_1
PDS5
CLASP_N
SCD
Cnd1
Adaptin_N
TAF6_C
CEP104-like_TOG
TPR_TNPO3_IPO13_3rd
DUF3102
Motif
Other DBs
NCBI-GeneID:
124708107
NCBI-ProteinID:
XP_047095752
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Position
4:complement(48202121..48207722)
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AA seq
587 aa
AA seq
DB search
MATVDQSLYPIAVLIDELKNEEIPLRLNSIRKLSTIARALGEERTRKELIPFLSENNDDE
DEVLQAMAEELGVFVPYVGGVEHAHVLLPPLETLATVEETCVRDKAVESLCRIGAQMKEK
DVVDYFVPVVTRLASGEWFTARVSSCGLFHIAYPSAADQLKSELRIVYGHLCQDDMPMVR
RAAASNLGKFAATVEQSHLKKEIVSIFDNLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
HILPVIVNFSQDKSWRVRYMVANQLYELCEAAGPEPTRADLVPAYVRLLRDNEAEVRIAA
AGKVTKFCRILSPQVAIQHILPCVKDLSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL
PIFLSLLKDEFPDVRLNIISKLDEVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
IPLLARQLGVGFFDDKLGALCMQWLEDKVYSIREAAANNLKRLAEEFGPEWAMQHIIPQV
LEKINNPHYLYRMTILQAISLLAPVMGPEITCQTLLPVVVNSSKDRVPNIKFNVAKVLQS
LVPILDQSLAEKTLKPCLVELSEDPDVDVRYYAKQALQACDQIMVSS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggctacggtggaccagtcgctgtatccgatcgcggtgctgatagacgagctcaagaat
gaggagatcccgctgcgtctgaactccatcaggaagctctccacgatcgcgagggcgctc
ggggaggaaaggaccaggaaggagctgatccctttcctcagcgagaacaacgatgacgag
gacgaggtgcttcaggcgatggctgaagagttgggcgtgttcgttccttatgtcgggggt
gtagagcatgctcatgttctgctcccaccgttggaaacgttggctacggtggaggaaact
tgtgtccgggacaaagcggtcgagtcgctgtgccgtatcggtgcgcagatgaaggagaag
gacgtcgttgactatttcgttccagtggtgacgaggctagcatctggtgagtggtttacg
gctagagtatcatcctgtggtcttttccatatagcctatccaagtgccgccgaccagttg
aaatcagagctgagaatcgtttatggccatttatgccaagatgacatgcctatggtcaga
agggcagcagcatcaaatcttgggaagtttgctgcaacagttgaacagagccatttaaag
aaggaaatcgtctcgatatttgataatttaacccaagatgatcaagattcagtacgtttg
ttggcagttgaaggctgtgccgccctagggaaattgttggaaccccaagattgtgttgca
catatacttccggtcattgtcaatttctcccaggataaatcttggcgtgtccgttatatg
gttgccaatcaattgtacgaactctgcgaggctgctggccctgagcctacaagagcggac
ctggtgcctgcatatgttcgccttcttcgtgataatgaggctgaagtacggatcgcagct
gctggaaaagttactaagttctgcaggatattaagcccgcaagttgcaattcagcacatc
ctaccatgtgttaaggatttatcatcagattcgtctcagcatgttcgctcagctttggct
tcagtcattatgggaatggcccctgttttggggaaggatgcaaccattgagcaacttctt
cctatttttctttctttgctcaaggatgaatttcctgatgttcgactcaacataatcagc
aaacttgatgaagtgaatcaggtcattggcattgacttgctgtcacaatctttattgccg
gccattgtagaactagcagaggataggcactggagggtccggcttgcaataattgagtac
atccctctgttggccaggcagttaggtgttggattttttgatgacaagctaggagcactt
tgcatgcaatggttggaggataaggtgtactctattagagaagctgctgcgaacaacttg
aagcgcctggcggaggagtttggtcctgagtgggcaatgcagcatataattcctcaggtg
ctggagaagataaacaacccgcattacctgtaccgcatgaccattctgcaagccatctca
ttgctagcccctgtcatgggcccagagataacatgccaaacgctgctccccgtcgttgtt
aattcctcaaaggacagggtgcccaacatcaagtttaacgtggccaaggtcctgcagtcg
cttgtaccgatcctcgatcagtccttggctgagaagactttgaagccctgccttgtggag
ctcagcgaggaccctgacgtggacgtgaggtactacgcgaagcaggccctccaggcgtgc
gatcagatcatggtgtcgagctaa
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