Lolium rigidum (rigid ryegrass): 124708330
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Entry
124708330 CDS
T09103
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lrd03016
]
124708330
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
124708330
Transfer RNA biogenesis [BR:
lrd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
124708330
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
BDM
Motif
Other DBs
NCBI-GeneID:
124708330
NCBI-ProteinID:
XP_047095959
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Position
4:complement(54766496..54773020)
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AA seq
776 aa
AA seq
DB search
MMRPSPMAARAASGCSTAALAFFRLRPLGRAARPAAAPVGRFAFSGTAACRGRLVDSVLQ
ELRSRRPVRVSARIGLQGTKELSDSKIDKKTLRKGLLLEFVKDSERSLLAVVERPDGKKN
WVVTDQNGILSSIKPQQVTYVVPGTIDFDCSRIAEFLEKAQDLLDPTILECAWMELSEKD
KSVTVEEFADIVYGSKESLESYCAHFLLSRDIVYFVKVDNRGSSTYQPRPSAQVDELIRR
KLAKEVADKELEEFVDLLKSAKALPLDSKPSKSSWLMEEKVKQKIESLQAYAVDACSDAQ
RRMAGNILKALGFSRTSSAALKLLINVGYFPVHVNLDLFRYDVQTTYSEEVLSVAEELLA
DCPDSDKHIRKDLSNLRVYAIDVDEADELDDALSATRLPDGRIKVWIHVADPTCFLQPRS
IIDREAMHRGTSIFLPTATYPMFPERLAMNAMSLQQGTDCRSVSVSVTLHPDGSIAEYTI
ENSVIKPTYMLTYEGATELLYMNLEEEEDLRILQEAASIRAQWRCSQGSIDTSMIEPRIK
VANPDDPEPNINLYVEDQTNPAMQLVTEMMILCGEAVAAFGADNNIPLPYRGHPQSSTAV
TAFAYLPEGPARSVANISVLRAAEMDFRKPVAHGVLGVPGYVQFSSPIRRYVDLLAHYQV
KAFLRGESPPYSAGDLEGMTFIASMHVKVARRLHSNSLRYWLLEYLRRQPKGRKYKALIL
KFMKDRMATLLLLDVGIQVTTMVAAGKVGDGATVVVEMVHPRDDILSVTEIPEDTE
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggccgtcgcccatggcggcgcgggcggcgagcgggtgctccacggcggcgctg
gccttcttccgcctccggcccctcggccgcgccgcccgccccgccgccgccccggtcggg
cgcttcgctttcagcggcaccgccgcctgccgcggccgcctcgtcgactccgtcctccag
gagctccggtcccggaggcccgtacgggtctcggcgaggatagggttgcagggcacaaag
gaactgtcggacagtaagatagacaagaaaacattacgaaaaggattgctgcttgaattc
gtcaaagattctgagcgatccttgctcgcagttgtagaaaggcccgatgggaagaaaaac
tgggtagtgactgaccagaatggtatcctgtcatctataaagccccagcaggttacatat
gtcgtacctggtaccatagattttgattgctcaagaatagctgaatttctcgagaaagcg
caagatcttttggaccctaccatcttggaatgtgcctggatggagctttctgagaaggac
aaatcagtaacagttgaggagtttgcagatatagtatatggtagcaaggagtctctggaa
agctactgtgcacacttcttgctatcacgggatattgtctattttgtgaaagtggacaac
agaggttcgtccacatatcagcctcgaccgtctgctcaggtggatgaacttatacgaagg
aagcttgctaaagaggttgctgataaggaactggaagaatttgttgacctactcaagtct
gctaaagcattgcctctagactctaagccttctaaaagttcatggttgatggaagagaag
gtgaaacaaaaaattgagtcccttcaggcatatgcagttgatgcatgtagtgatgcacaa
agaagaatggcgggaaatattctcaaggctctggggttctcacggacttcatcagctgcc
ctaaagcttctcataaatgttgggtacttccccgtgcatgtcaaccttgatcttttcaga
tacgatgttcagaccacatatagtgaggaagtcttgtctgttgctgaggagcttctggcg
gattgccctgattcagataagcatatcaggaaggatctttcaaatttgagagtgtatgcc
attgacgtggatgaggctgatgaacttgatgatgcactaagtgcaactagactacctgat
ggtaggataaaagtctggatacatgtagctgacccaacatgctttcttcaaccccggagc
atcattgacagggaagccatgcacagaggaacctcgatatttttaccaactgccacctat
ccaatgttcccagagaggcttgccatgaatgctatgagcttgcaacagggtacagattgt
agatctgtgagtgtatctgtgactttgcatccagatggaagtattgcagaatatacgata
gagaactcagtaatcaaacctacctacatgttaacgtatgagggtgcaactgaattgctg
tacatgaatctggaagaagaggaagacctgaggattcttcaagaagctgcttcaattcgt
gcgcaatggcgttgtagccaaggttcaatcgacacttctatgatagaacctcgtatcaag
gtggcaaatcctgatgatcctgaaccaaacattaacctatatgttgaagaccaaaccaac
ccagcaatgcagcttgtaactgagatgatgatactttgcggggaggcggtagctgctttt
ggtgctgacaacaatattcctttgccgtacagagggcatccccagtctagtacagctgtg
acagcatttgcctatctacctgaagggcctgccaggagcgttgccaatatcagtgtactt
cgtgctgcagaaatggatttccgaaaacctgtagcacatggtgtcctcggagttcctggt
tatgtacagttctcctcccccattcgaagatatgtcgatctgcttgcacattatcaggta
aaggcgtttcttagaggtgaatctccaccatattcagctggtgacctagaaggaatgaca
tttattgcgagcatgcatgttaaagtagctaggaggctccatagtaacagtttacgttac
tggttgctggaatacttaaggagacagccaaaggggaggaagtataaagcactgatactt
aagttcatgaaggatcgtatggcaactttgcttttgttggatgtcgggatccaagtcacg
accatggttgcagctgggaaagtgggagacggagctactgttgttgtggaaatggttcat
ccccgtgacgacatcttatcagttacagagattccagaagatacggagtaa
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