Lolium rigidum (rigid ryegrass): 124708362
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Entry
124708362 CDS
T09103
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124708362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124708362
03041 Spliceosome [BR:
lrd03041
]
124708362
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124708362
Spliceosome [BR:
lrd03041
]
Complex B
Other components
Prp19-related factors
124708362
Complex C
124708362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Suf
Mad3_BUB1_I
TPR_19
TPR_16
Motif
Other DBs
NCBI-GeneID:
124708362
NCBI-ProteinID:
XP_047095993
LinkDB
All DBs
Position
1:57596585..57598915
Genome browser
AA seq
776 aa
AA seq
DB search
MEIEVSADDVAYEEDVLRDPFRLSGWLRYLSSLRAAPPAKRSAIYERSLRALPGSYKLWH
AYLTELADAARALPVTHRAHAEANAAFERALAAGMARMPRVWHMYASSLLDQRLLTRARR
ALDRALRSLPVTQHHRVWPLLLRLASLQGCPAETALAVHRRHLQFDPGHAEDLVAFLVSA
GRWRDAAEHLAAAINDDGFVSVKGTTKRQLLLDLCGLLAQHPEEVAGMPVDAILRGGIRA
FFRDEAGALWTCLAGHYARTGLHGKARDVFEEGATTATNVKDFQMVFDAYLHFEHALAAA
ELGQAETVDIQSFWLSDRDSTDLTMARLERLLERRPELLNGVLLRQNPHDVQAWHERAKI
FDKDPARHAATYVEAVRTVDPAKATGKPPHTLWLALAKMCEDRGRVECARDVFQRATQAN
FTAPDHLAAVYCEWANMELRQQNPERVIDLIRQATSEPSAEVRRRAAAAVSGEPVQMKLH
RSLKLWIMYLDLTKTHGSLDSTCAVYDRMHDLGLATPLLVLDHATFLEDHQRFEDAFQVY
ERGVKSFRHPHDEAIWEAYLTKFVQRHGRSRPERVRDLFEGAVLQAPPERKKALYLKYAR
FEEEFGLAGRAMKVYEDAASAVPAGDRLGVYEVYVARATELYGVLKARDVYCQAISGGGL
PDKDATTMCVRFADLEIGLGEVARARALYVYAASFTDPDVHCEFWKRWNDFELLHGDEST
FREMLLVKRTAAASAGAAVSEMDDFRAAPKRLLRACAGQQLSGASIAQQCKRTRLV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgaggtctcggcggacgacgtcgcgtacgaggaggacgtcttgcgagacccg
ttcaggctgtccggctggctgcggtacctatcttctctccgcgcggcgccgccggcgaag
cgctctgccatctacgagcgctcgcttcgtgcactcccgggctcgtacaagctctggcac
gcctacctcacggagctcgccgacgccgcgcgcgcgcttcccgtgacccaccgcgcccac
gccgaggccaacgccgccttcgagcgcgcgctcgccgccggcatggcacggatgccgcgc
gtctggcacatgtacgcctcatcgctcctcgaccagcgcctcctcacccgcgcccgccgg
gcactcgaccgggcgctgcgctcgctccccgtcacgcagcaccaccgcgtgtggccgctc
ctcctccgtctcgcctccctacaaggctgcccggccgaaaccgccctcgccgtccaccgc
cgccacctccagttcgatcctgggcacgccgaggatctcgtcgcgttcctcgtctccgcc
ggcagatggcgcgacgccgccgagcacctcgccgcggccattaacgacgatggcttcgtg
tccgtcaagggcacgacgaagcgccagctgcttcttgacctctgtggcctactcgcccag
cacccggaggaggtcgccgggatgccggtggacgccatcctccgcggcggcatccgcgcg
ttcttccgcgacgaggccggtgcgctgtggacgtgtctggctggccactacgcgcggacg
gggctccacggcaaggcgagggacgtgttcgaggagggcgctaccacggcgaccaacgtc
aaggacttccagatggtgttcgacgcctacctgcacttcgagcacgccttggccgccgcg
gaactcggccaagcggagaccgttgacatccagagcttctggctgtcggaccgagacagc
acggacttgacgatggcgaggctggagcggctgctggagcgccggccggagctgctcaac
ggcgtgctgctgaggcagaacccgcacgacgtccaggcatggcacgagcgggccaagatc
ttcgacaaggatcccgcgagacacgccgcgacttacgtggaggctgtcaggaccgtcgat
ccggcgaaggccaccgggaagccgccgcacacgctctggctagcgctggccaagatgtgc
gaggaccgcggccgcgtcgagtgcgcccgagacgtcttccagagggccacacaggcgaac
ttcacggccccggaccacctcgccgcggtctactgcgaatgggcaaatatggagctgagg
cagcagaatcccgagcgtgtcatcgacctcatccggcaagcgacgtcggagccatcggcc
gaggtcaggaggcgcgccgctgccgccgtgagcggcgagcccgtccaaatgaaactgcac
cgatctctgaagctgtggatcatgtacctggacctgacgaagacacacggatcgctcgat
tccacctgcgccgtctacgacaggatgcacgatctcggcctcgccacgccgctgctggtg
ctggaccatgccacctttctggaagatcaccagaggttcgaggacgcgttccaggtctac
gagcgcggcgtcaagtcgttcaggcacccccacgacgaggccatctgggaagcgtacctg
accaagttcgtgcagaggcacgggaggagcaggccggagagggtgagggacctgttcgag
ggcgccgtcctgcaggcgccgccggagaggaagaaggcactgtaccttaagtacgcaaga
ttcgaggaggaattcggactcgccggccgcgcgatgaaggtgtacgaggatgccgcgagc
gccgtcccggccggcgacaggctcggcgtctacgaggtgtacgtcgcccgggccacggag
ctctacggcgttctgaaggcgagggacgtgtactgccaggcgataagcggtggcggcctc
ccggacaaggacgcgacgacgatgtgcgtcaggttcgccgacctcgagatcgggctggga
gaagtcgcgcgcgctcgagcgttgtacgtttacgcggcgagcttcacggatccagatgtt
cactgtgagttttggaaacggtggaacgacttcgagcttctccacggcgacgagagtacg
ttcagggagatgctccttgtcaagagaactgccgctgctagcgccggcgccgccgtgtcg
gagatggacgatttccgggccgcaccgaagaggctgctgcgtgcgtgcgccggccaacaa
ctcagcggtgctagcattgctcagcaatgcaaaaggacacgtctggtgtaa
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