Lolium rigidum (rigid ryegrass): 124708680
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Entry
124708680 CDS
T09103
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03030
DNA replication
lrd03420
Nucleotide excision repair
lrd03430
Mismatch repair
lrd03440
Homologous recombination
lrd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124708680
03420 Nucleotide excision repair
124708680
03430 Mismatch repair
124708680
03440 Homologous recombination
124708680
03460 Fanconi anemia pathway
124708680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrd03000
]
124708680
03032 DNA replication proteins [BR:
lrd03032
]
124708680
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124708680
Transcription factors [BR:
lrd03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124708680
DNA replication proteins [BR:
lrd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124708680
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124708680
MMR (mismatch excision repair)
124708680
DSBR (double strand breaks repair)
HR (homologous recombination)
124708680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
zf-CCHC
tRNA_anti-codon
zf-CCHC_2
DUF223
zf-CCHC_5
BRCA-2_OB1
DUF936
Motif
Other DBs
NCBI-GeneID:
124708680
NCBI-ProteinID:
XP_047096311
LinkDB
All DBs
Position
4:complement(36949775..36953702)
Genome browser
AA seq
948 aa
AA seq
DB search
MEAPPPPLAAGAVKEIAELPNGPGTTQPVLQAADVRPVTAKGAAAGVQQSERFRMLVSDG
VHSLQSMLSTDLNHLVRDGTLRPGSIVQLMDIMCNTIQGRRIIIVCKLDVLRTECAMIGK
PKLYETKTVREGQEPNLQANAVAPRVEQFASNLPYGGPSNGAHGTGGSSIGRTIENGPNN
VLPGGSYGTMPAQNTMNANVVQPNAQRPLLNSQQNTLNANVVQPNSQRPLPNSHQNQRFA
GSGTGGYSGPPGNIYMRPAQPSYQQPPPVGTGGYSGPPGNTYMRPAQPSYQQPPPVYRNS
GPAAKNEAAPRVVPISALNPYQGIWTIKARVTAKTHVHHYVNGRGPGKLFTFDLLDAHGG
EIRAKCFNEVVDKFCDLIEVDKVYLLSRGGLKPAQKQYNHLNNDYEISLDATTSIEVCSS
DDSSIPRQQFNFQQISEIANMDKGATVDLLAVVTSVSPSFPVMRKNGMETQKRMVELKDM
SGCSVETTFWGNFCDAEGQQLQVLCDSGSNPILALKSGLVGDFNGKSVGTISSSSLKINP
DFPDAEKLRQWYMTEGKNAAFSSLSGRMSGTGMTDVRKTVAQIKDEGLGRSEKPDWVTVM
GAISHIKTDSFCYPACTVEVNGTRCNKKVTNNGDGMWQGEKCDHSSQDCEYRYVMQCRIQ
DHTGTTYATAFQEAGEEILGLTAQDLFRIKNEDEVQFAGIIQGVSFQQYLFKLKVKEETF
NDEARLKANIVKAQKLDDTSKNSCSLLGAIESLLVEEDGSGSTPGANGAAAINPGTTSNN
NHAMNAQTCAVCGSNEHSVQNCPAVAMDMQQPAASGFTASSYGSSAGYANASSGVCFKCN
QPGHYSSNCPGQAISYGYSAGNANARSDLCFKCHQPGHFSSNCPGQAAISYGSSGGNTNA
RSDVCYKCNQPGHFAKDCVAQAAAPQRQSYGNSATSGGYNRQSYVGSF
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgccgccgccgccgctggccgcgggcgcggtgaaggagatcgcggagctgccc
aacggccccggcacgacccagccggtgctgcaggcggcggacgtgcggcccgtgaccgcc
aagggcgcggcggcgggggtgcagcagtcggagcggttccggatgctcgtctccgacggc
gtccactcgctgcagtccatgctctccaccgacctcaaccacctcgtcagggacggcacc
ctccgcccaggctccatcgtccagctcatggacatcatgtgcaacaccatccagggacgc
aggatcattattgtttgcaaacttgatgttctgcgaactgagtgcgccatgattgggaag
ccaaagctttacgagacgaaaaccgtacgtgaaggccaggagcccaacttacaggctaat
gctgttgccccaagggtggagcagtttgctagcaatctgccatatggtggaccctccaat
ggtgcccacggcacagggggctcttctattggtcggacaatcgaaaatggacctaacaat
gtgttgcctggtggatcttatggtacaatgccagcacagaacacaatgaatgccaatgtg
gtgcagccaaacgctcagcggcccttactgaactctcaacagaacacactgaatgccaat
gtggtgcagccaaactctcagcggcccttaccgaactctcatcaaaaccaaaggtttgcg
ggttctggtacaggtgggtactctggccctcctggcaatatttatatgcgtcctgcacag
ccttcgtatcagcagccacctccagtaggtacaggtgggtactctggccctcctggcaat
acttatatgcgtcctgcacagccttcgtatcagcagccacctccagtatatagaaatagc
ggtccagctgctaagaatgaagctgcccctcgtgttgtccctatttctgcgttgaaccca
taccaaggtatatggacaataaaggccagggtgactgcaaagactcatgtccatcactac
gtcaatggaagaggtccaggaaaactcttcacctttgatctccttgatgcacatggtgga
gaaattcgtgcaaaatgctttaatgaggttgttgataagttctgtgacctaattgaggtt
gataaggtgtatttgctatctagaggggggttgaaacccgcacagaagcagtataaccat
ttgaacaatgactatgaaatcagtctggatgctacaacatctatagaagtttgttctagt
gatgacagcagcatccctaggcagcagttcaatttccaacaaatcagtgaaatagcgaat
atggataaaggagccacggtagatttacttgcggttgttacttcggttagcccttctttt
ccagtaatgcggaagaatggtatggaaacccagaaaagaatggtcgaactgaaggacatg
tctggttgcagcgtggaaacaaccttctggggtaacttctgtgatgctgaaggtcagcag
ctgcaggtgctgtgtgattctggttcaaatcctatacttgccctgaaaagtggccttgtc
ggtgatttcaatggcaaatcagtgggcacaatcagctcaagctccttaaaaataaatccg
gactttcctgatgcagaaaagctgaggcagtggtacatgactgaaggcaaaaacgctgct
ttcagttctttgtctgggagaatgtcaggcacaggcatgactgatgttcgaaaaactgtt
gctcagatcaaggatgaaggcttggggagatcagagaagcctgattgggtcactgttatg
ggtgcaatttcacacatcaagaccgacagtttttgttaccctgcttgcaccgtggaggtt
aatggtacgcggtgcaataaaaaggtcacaaataatggtgacgggatgtggcaaggcgag
aaatgtgatcacagctctcaagattgcgaatataggtatgtgatgcagtgtcgaatccag
gatcacactgggactacctatgcaactgctttccaagaggctggcgaggagatccttggc
ctcacagcgcaagatcttttcaggataaaaaatgaagacgaagtacaatttgcaggaatc
atacagggtgtttctttccagcagtatctcttcaagctgaaagtcaaggaagaaacattt
aatgatgaagcacgtctgaaagccaacattgttaaggctcaaaaattggatgacacatcg
aaaaatagttgttctcttttgggagcaattgagagcctgttggtggaggaggacggctca
ggctcaactcctggggcgaatggtgctgctgctattaaccctgggaccacctccaacaat
aaccatgccatgaatgcacagacttgcgctgtttgtgggtctaatgagcacagtgtgcag
aactgtcctgcggtggccatggatatgcagcaaccagcagcaagcggcttcacggctagt
tcctatggttcctcggctggctatgccaacgccagttcaggcgtgtgcttcaaatgcaat
cagcctggacactactctagcaactgcccagggcaggccatctcctatggttattcagcc
ggcaacgccaacgccagatcagacttgtgcttcaaatgtcatcagcctgggcacttctct
agcaactgcccagggcaggcagcaatctcctacggctcttcaggtggcaacactaatgcc
agatcagacgtgtgctacaaatgcaatcagcctgggcacttcgccaaagactgtgtggcg
caggctgctgccccccagcgccagagctacggaaatagtgccacgtcaggaggatacaac
aggcagtcctatgttggtagtttctga
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