Lolium rigidum (rigid ryegrass): 124708742
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Entry
124708742 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124708742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124708742
03036 Chromosome and associated proteins [BR:
lrd03036
]
124708742
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124708742
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124708742
mRNA degradation factors
5'-3' decay
Decapping complex
124708742
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124708742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
EPL1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
124708742
NCBI-ProteinID:
XP_047096368
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All DBs
Position
4:64588099..64594219
Genome browser
AA seq
528 aa
AA seq
DB search
MHHPRARYPPGYDYGGAGGGGRGGNGGGGGNGGGGGGGGGGGGNQNYYGGRNPHPQHHDY
HHQQQQHGQRNSFPQQQQYQQRNSLSQQQQQQQQHQQWLRRDQAAAQASGEAAARAAPRL
DAVDTSSQDWKAQLNIPAPDTRFRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPI
QEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQ
VCKELGKYLNIEVMVSTGGTSLKDDIMRLYQPVHLLAGTPGRILDLTKKGICMLNECSML
IMDEADKLLAPEFQPSVEQLIRYLPASRQLLLFSATFPVTVKDFKQKYLPRPYVINLMDE
LTLKGISQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFY
IHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRVG
RSGRFGHLGLAVNLITYEDRFNMYRIEQELGTEIKTIPPQIDLAEYCQ
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgcaccacccgagggcccggtacccacccggctacgactacggcggcgccggcggaggc
ggccgtggaggtaacggcggcggtggaggtaacggcggtgggggtggcggcggtgggggt
ggcggcggaaaccaaaactattatggtggccgaaacccgcacccgcagcaccatgattac
caccaccagcagcagcagcacgggcagaggaattcgttcccgcagcagcagcagtaccag
cagaggaattcgctctcgcagcaacagcaacagcagcaacagcatcagcagtggctgcgg
cgggaccaggccgcggcccaggcatcaggagaggccgcggcaagggcagcgccgcggctc
gacgccgtggacacgagctctcaagattggaaggcacagttgaatattccagctccagat
actcgtttcaggacagaggatgttactgcaacaaaaggcaacgagtttgaagattatttt
ttgaagcgcgaactacttatgggaatatatgagaagggatttgaaaggccatctcctatt
caagaagagagcattccaattgctcttactggaagtgatattcttgcaagagcgaaaaac
ggcactggcaagactgctgcattttgcattccagcacttgaaaaaattgacccagagaaa
aatgccatacaagttgttatattggtaccaacaagggaactagccctgcagacttcacaa
gtttgcaaagagcttgggaagtacctgaatattgaagttatggtgagtactggaggaacc
agcttgaaggatgacattatgcgtttgtaccaacctgttcatttacttgctgggacacct
ggacggatactggaccttaccaagaaggggatttgtatgctgaacgagtgttcaatgctc
attatggacgaggcagacaagctgttggctcctgagtttcagccttccgtggaacaactt
attcgctaccttccagctagtcggcaactattgctgttttctgcaacctttcctgtaact
gtcaaggatttcaagcagaaatatctgcctaggccttatgttattaatctgatggatgaa
ctaacactgaaaggaatttcacaatactatgcttttgtagaagaaaggcaaaaagttcat
tgtctgaacacacttttctcaaagcttcaaataaaccagtctattatattctgcaactct
gttaatagagttgagctactggctaagaaaatcactgagcttggctattcgtgcttctac
attcatgctaaaatgttgcaagaccatcgaaaccgagtgtttcatgattttcgcaatggt
gcttgcagaaaccttgtgtgcacagatctttttaccagaggaattgacatccaagctgtt
aatgttgtcattaattttgacttccccaagactgctgaaacatatttgcatagggttgga
cgttctgggagatttgggcacctcggtttggcagtgaatttaatcacttatgaggaccgc
ttcaacatgtataggattgagcaagaacttggcacagaaataaaaacaatacctccacag
attgacctggcagaatattgccaatga
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