Limosilactobacillus reuteri subsp. reuteri DSM 20016: Lreu_0394
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Entry
Lreu_0394 CDS
T00535
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lre
Limosilactobacillus reuteri subsp. reuteri DSM 20016
Pathway
lre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lreu_0394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lre03019
]
Lreu_0394
03016 Transfer RNA biogenesis [BR:
lre03016
]
Lreu_0394
Enzymes [BR:
lre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Lreu_0394
Messenger RNA biogenesis [BR:
lre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Lreu_0394
Transfer RNA biogenesis [BR:
lre03016
]
Prokaryotic type
tRNA degradation factors
Lreu_0394
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ABQ82663
UniProt:
A5VII9
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All DBs
Position
447553..449958
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AA seq
801 aa
AA seq
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MTTNNLKEKILTHLTDNAGVSYSAEKLAHQLGMDDAEQFTPIVQSLAQLEREKKVQVTDR
GEFEAVIKQQPLIGTFHGNDKGFGFVDYDPDLPDMYINPDHTLYALNGDQVEVKVLRPAK
AGSDQGPEGQVTRIVEHKYENVVGEFKQATIGDDYIGEILLKDKKLSQYHFYVTDKGLKP
LDGQVVTATVETYPSDEAPEVMTGAVTEVIGDKDEPGIDIMSVIYAHDVPHEFPKEVMEQ
ANKIPLHVLPEEKKGRVDITDQPLVTIDAIESKDLDDAVVAWKMDNGHYHLGVHIADVTH
YVKPGTPLDQEAFKRGTSVYLTDRVVPMLPKRLSNGICSLNPNEERLAMSCEMEIDEQGK
IVNHRIFQSVMKSHARMTYKAVNKILESHDAKTMKQYEDLVPMFETMGEIHKLLLKNRKK
RGAIDFEAPEAKIIVDEKGHPTDIQLRNRGLSERMIESFMLAANETVAEHYFKERVPFLY
RIHETPDSDRIKSFVDFLAVFGIDVHGDIKNVKPGMLQKVLKDVAGTPEEQMVQVMMLRS
MQQAKYSDEELGHFGLGAKYYTHFTSPIRRYPDDTVHRLIKWYEEHGKNEPAKDHWRDKL
PEIAEHTSVTERRGIDTERDVDSMKKAEYMEDHVGETFDAVVSSVMKFGLFVELPNTVEG
LVHISVMKDDYYEYSEKHMALIGRNSHRIFQMGQPIKVKLVRADKDLREVDFEIVNPEEA
PKTKIRVPRNDEYRGRGRGRKGRTNNNSRHENNNGNYYRNTQGKWRRTHQENGHQNNRQI
NRGQTRHHNNSRDHEGVRRHH
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaaataatttaaaagaaaaaatattaacacatttaacagataatgcaggtgtg
agttactcagcagaaaaacttgctcatcaattaggaatggatgatgctgagcagtttaca
ccgatcgttcaatctcttgctcaattggaaagagagaaaaaggttcaagtaactgatcgt
ggtgaattcgaagcagttattaaacagcaaccacttattggaactttccatggtaatgat
aagggatttggttttgtagactatgacccggatcttccagacatgtatattaatcctgat
cacactttgtatgcattaaatggggaccaggtagaagttaaagtattacgtccagcaaaa
gcaggtagtgatcagggtccagaaggtcaagtaacccggattgttgaacataaatatgaa
aatgtagttggtgaatttaagcaagcgactatcggcgatgattacattggtgaaattttg
cttaaagataagaaattatcgcagtatcatttctatgtaacggacaagggattaaaacca
cttgacggccaagtagtaacagctactgttgagacttatcctagtgatgaggcaccggaa
gtaatgacgggtgccgttactgaagtgattggtgataaggatgagccgggtattgatatt
atgtcagtaatctatgctcacgatgtccctcatgaattccctaaagaagtgatggaacaa
gctaataagattccgcttcatgttctcccagaagaaaaaaagggtcgggtggatattact
gaccaaccacttgttaccattgatgcaattgaatcaaaagacttggatgatgcggtggta
gcttggaagatggataatgggcactaccaccttggggttcatattgctgatgttactcac
tatgtaaagccaggtacaccgcttgatcaagaagcatttaagcgtggtacatctgtttat
ctaactgatcgggtagttccaatgcttcctaagcggctttctaatggaatttgctcttta
aatcctaatgaagaacgtcttgctatgagttgtgaaatggaaattgatgagcaaggaaag
atcgttaatcaccgaatcttccaaagtgttatgaaatcacatgcccgaatgacttataaa
gcagttaataagattctggagtcgcatgatgctaaaacgatgaaacaatatgaagacctc
gttccaatgtttgaaacaatgggcgagattcacaaattattgcttaaaaatcggaaaaaa
cgtggtgctattgactttgaagctcctgaagcaaagattattgtggatgaaaaggggcac
ccaactgatattcaactacggaatcgaggactttctgaacggatgattgaatcctttatg
ttagctgctaatgaaacagttgctgaacactacttcaaagaacgtgttccattcctttat
cggatccacgagacaccagatagtgaccggattaagtcatttgtggactttttggctgtg
tttgggattgatgttcatggtgatattaaaaatgttaaaccagggatgcttcaaaaagta
ttaaaggatgtggctggtactcctgaagagcaaatggtccaagtgatgatgttacgtagt
atgcaacaagctaaatactcggatgaagagctaggtcactttggtttaggcgctaaatac
tacacacactttacttcaccaattcggcgataccctgatgatacagttcaccgcttgatt
aagtggtacgaagaacatggtaaaaacgaaccagctaaggatcattggcgtgacaagctt
cctgaaattgctgaacatacttccgttaccgaacgacggggaattgatacagaacgtgat
gttgacagtatgaagaaagccgaatacatggaagatcatgttggtgaaacctttgatgcc
gtcgtaagttcagtaatgaagtttggtttgttcgttgaattaccaaatacagttgaaggg
ttagttcatattagcgtcatgaaggatgattattatgaatattcagaaaaacacatggct
ctaatcggacgaaactctcatcgaattttccaaatggggcaaccaattaaggttaagtta
gttcgagcagataaagatcttcgtgaagttgactttgaaattgttaaccctgaagaggca
ccaaagacaaagattcgggttccacgtaatgatgagtatcgtggtcgaggtcgtggtcgc
aagggacgtaccaataataattcccgtcatgagaataataatggtaactattaccgtaat
actcaaggaaaatggcgtcgcactcatcaagaaaacggacatcaaaataatcgtcaaata
aatcggggacaaactcgtcaccacaataattcacgtgatcatgaaggcgttcgtcgccac
cattaa
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