Limosilactobacillus reuteri subsp. reuteri DSM 20016: Lreu_0532
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Entry
Lreu_0532 CDS
T00535
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lre
Limosilactobacillus reuteri subsp. reuteri DSM 20016
Brite
KEGG Orthology (KO) [BR:
lre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lre03019
]
Lreu_0532
03009 Ribosome biogenesis [BR:
lre03009
]
Lreu_0532
Enzymes [BR:
lre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lreu_0532
Messenger RNA biogenesis [BR:
lre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lreu_0532
Ribosome biogenesis [BR:
lre03009
]
Prokaryotic type
rRNA helicases
Lreu_0532
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
StrH_N
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABQ82800
UniProt:
A5VIX6
LinkDB
All DBs
Position
595456..596829
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AA seq
457 aa
AA seq
DB search
MSDKKFADFQLQPYLLTAIQKINFRQPTPVQQRVIPVIMAGRSVVGQSATGSGKTHAFLL
PIFSKIKPEDQTVQAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQ
LSRKQPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPND
LQMMVFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRNQLIYRLL
TLGEPYLALVFANTKERAVKLTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVV
ATDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAEDDLIAKL
EERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVKKTKKKVKPGYKKRIK
KAIKEDEQQKRKLELRHKIRKAKRARQKQHRRERNAR
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataaaaaatttgctgattttcagttacaaccttatctgttaacagcgattcaa
aaaattaattttcgtcaaccgacaccggtccaacaacgagtaataccagtgattatggct
ggacgaagtgttgtagggcaatcagcgaccggtagtgggaaaacacatgcctttctctta
ccgattttttcaaagatcaagccagaagatcaaaccgttcaagcagtaatcacaactcct
agtcgggaattagcataccaaatttataatgcggccaagcaacttaataagtatgctcct
catcctcttaccattcacaattatgtcggtggtacagacaagcagcatcaagttgaccaa
ttaagccgaaaacaacctcaattggtcattggaactccaggaagagtattagacttaatc
aagagtcaggcattggatattcacacagcgaaaatgtttgtggtggatgaagcggacatg
accctagatatgggattcttacatgaagttgaccaaattgccagtcattttcctaatgac
cttcaaatgatggttttctcagcaacgattccgcagaaactgcgcccattcttaaaaaag
tatatggaaaatccagtcgttgaagagattcctactgaagcagtaattaatccagatgtt
gataattggttaatgtcaactaaggggcaagatcgtaaccagctaatttatcgtttgctg
actcttggtgaaccatatcttgcgttggtatttgctaatacaaaagagcgagcagttaaa
ttaacccagtacttagaaaatcaagggctcaaagtagcaatgattcatgggggactagaa
gctcgccgtcgtaaacggacaatgcggcaaatccgtgatcttgaatatcaatatgttgta
gcaactgatctagcagctcgtggaattgatattgatggagtatcactagtaatcaatgac
gacttgccaactgatcttgaatattttgttcatcgagttggtcgtaccgggcgaaatggg
atgaagggaacagccattaccctatatgagccagcagaagacgatttgattgctaagctt
gaggaacggggagttaaatttgtaccaaaagaattaaagaatggtcaactagtaactacc
catgaccgtaatcgtcggaagcattataagcggcggcaaaatgaacttgatccgtcaatg
aagggttacgtaaaaaagactaagaagaaggttaaacctggttataagaaacggattaaa
aaggcgattaaagaagacgaacagcaaaaacgaaagctagaattacggcataaaattcgg
aaagctaagcgtgctcgccaaaagcaacatcgccgtgaacgaaatgcccgttga
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