Limosilactobacillus reuteri subsp. reuteri JCM 1112: LAR_0389
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Entry
LAR_0389 CDS
T00735
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lrf
Limosilactobacillus reuteri subsp. reuteri JCM 1112
Pathway
lrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAR_0389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrf03019
]
LAR_0389
03016 Transfer RNA biogenesis [BR:
lrf03016
]
LAR_0389
Enzymes [BR:
lrf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LAR_0389
Messenger RNA biogenesis [BR:
lrf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAR_0389
Transfer RNA biogenesis [BR:
lrf03016
]
Prokaryotic type
tRNA degradation factors
LAR_0389
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BAG24905
LinkDB
All DBs
Position
455865..458270
Genome browser
AA seq
801 aa
AA seq
DB search
MTTNNLKEKILTHLTDNAGVSYSAEKLAHQLGMDDAEQFTPIVQSLAQLEREKKVQVTDR
GEFEAVIKQQPLIGTFHGNDKGFGFVDYDPDLPDMYINPDHTLYALNGDQVEVKVLRPAK
AGSDQGPEGQVTRIVEHKYENVVGEFKQATIGDDYIGEILLKDKKLSQYHFYVTDKGLKP
LDGQVVTATVETYPSDEAPEVMTGAVTEVIGDKDEPGIDIMSVIYAHDVPHEFPKEVMEQ
ANKIPLHVLPEEKKGRVDITDQPLVTIDAIESKDLDDAVVAWKMDNGHYHLGVHIADVTH
YVKPGTPLDQEAFKRGTSVYLTDRVVPMLPKRLSNGICSLNPNEERLAMSCEMEIDEQGK
IVNHRIFQSVMKSHARMTYKAVNKILESHDAKTMKQYEDLVPMFETMGEIHKLLLKNRKK
RGAIDFEAPEAKIIVDEKGHPTDIQLRNRGLSERMIESFMLAANETVAEHYFKERVPFLY
RIHETPDSDRIKSFVDFLAVFGIDVHGDIKNVKPGMLQKVLKDVAGTPEEQMVQVMMLRS
MQQAKYSDEELGHFGLGAKYYTHFTSPIRRYPDDTVHRLIKWYEEHGKNEPAKDHWRDKL
PEIAEHTSVTERRGIDTERDVDSMKKAEYMEDHVGETFDAVVSSVMKFGLFVELPNTVEG
LVHISVMKDDYYEYSEKHMALIGRNSHRIFQMGQPIKVKLVRADKDLREVDFEIVNPEEA
PKTKIRVPRNDEYRGRGRGRKGRTNNNSRHENNNGNYYRNTQGKWRRTHQENGHQNNRQI
NRGQTRHHNNSRDHEGVRRHH
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaaataatttaaaagaaaaaatattaacacatttaacagataatgcaggtgtg
agttactcagcagaaaaacttgctcatcaattaggaatggatgatgctgagcagtttaca
ccgatcgttcaatctcttgctcaattggaaagagagaaaaaggttcaagtaactgatcgt
ggtgaattcgaagcagttattaaacagcaaccacttattggaactttccatggtaatgat
aagggatttggttttgtagactatgacccggatcttccagacatgtatattaatcctgat
cacactttgtatgcattaaatggggaccaggtagaagttaaagtattacgtccagcaaaa
gcaggtagtgatcagggtccagaaggtcaagtaacccggattgttgaacataaatatgaa
aatgtagttggtgaatttaagcaagcgactatcggcgatgattacattggtgaaattttg
cttaaagataagaaattatcgcagtatcatttctatgtaacggacaagggattaaaacca
cttgacggccaagtagtaacagctactgttgagacttatcctagtgatgaggcaccggaa
gtaatgacgggtgccgttactgaagtgattggtgataaggatgagccgggtattgatatt
atgtcagtaatctatgctcacgatgtccctcatgaattccctaaagaagtgatggaacaa
gctaataagattccgcttcatgttctcccagaagaaaaaaagggtcgggtggatattact
gaccaaccacttgttaccattgatgcaattgaatcaaaagacttggatgatgcggtggta
gcttggaagatggataatgggcactaccaccttggggttcatattgctgatgttactcac
tatgtaaagccaggtacaccgcttgatcaagaagcatttaagcgtggtacatctgtttat
ctaactgatcgggtagttccaatgcttcctaagcggctttctaatggaatttgctcttta
aatcctaatgaagaacgtcttgctatgagttgtgaaatggaaattgatgagcaaggaaag
atcgttaatcaccgaatcttccaaagtgttatgaaatcacatgcccgaatgacttataaa
gcagttaataagattctggagtcgcatgatgctaaaacgatgaaacaatatgaagacctc
gttccaatgtttgaaacaatgggcgagattcacaaattattgcttaaaaatcggaaaaaa
cgtggtgctattgactttgaagctcctgaagcaaagattattgtggatgaaaaggggcac
ccaactgatattcaactacggaatcgaggactttctgaacggatgattgaatcctttatg
ttagctgctaatgaaacagttgctgaacactacttcaaagaacgtgttccattcctttat
cggatccacgagacaccagatagtgaccggattaagtcatttgtggactttttggctgtg
tttgggattgatgttcatggtgatattaaaaatgttaaaccagggatgcttcaaaaagta
ttaaaggatgtggctggtactcctgaagagcaaatggtccaagtgatgatgttacgtagt
atgcaacaagctaaatactcggatgaagagctaggtcactttggtttaggcgctaaatac
tacacacactttacttcaccaattcggcgataccctgatgatacagttcaccgcttgatt
aagtggtacgaagaacatggtaaaaacgaaccagctaaggatcattggcgtgacaagctt
cctgaaattgctgaacatacttccgttaccgaacgacggggaattgatacagaacgtgat
gttgacagtatgaagaaagccgaatacatggaagatcatgttggtgaaacctttgatgcc
gtcgtaagttcagtaatgaagtttggtttgttcgttgaattaccaaatacagttgaaggg
ttagttcatattagcgtcatgaaggatgattattatgaatattcagaaaaacacatggct
ctaatcggacgaaactctcatcgaattttccaaatggggcaaccaattaaggttaagtta
gttcgagcagataaagatcttcgtgaagttgactttgaaattgttaaccctgaagaggca
ccaaagacaaagattcgggttccacgtaatgatgagtatcgtggtcgaggtcgtggtcgc
aagggacgtaccaataataattcccgtcatgagaataataatggtaactattaccgtaat
actcaaggaaaatggcgtcgcactcatcaagaaaacggacatcaaaataatcgtcaaata
aatcggggacaaactcgtcaccacaataattcacgtgatcatgaaggcgttcgtcgccac
cattaa
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