Limosilactobacillus reuteri subsp. reuteri JCM 1112: LAR_0588
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Entry
LAR_0588 CDS
T00735
Name
(GenBank) exodeoxyribonuclease V alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lrf
Limosilactobacillus reuteri subsp. reuteri JCM 1112
Pathway
lrf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LAR_0588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrf03400
]
LAR_0588
Enzymes [BR:
lrf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LAR_0588
DNA repair and recombination proteins [BR:
lrf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LAR_0588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
AAA_22
nSTAND3
AAA
DEAD
DUF815
AAA_7
AAA_25
RsgA_GTPase
NPHP3_N
TsaE
AAA_29
HTH_IclR
Sigma54_activ_2
AAA_14
NB-ARC
AAA_28
AAA_16
HHH_5
Zeta_toxin
NTPase_1
Rad17
AAA_18
AAA_17
Motif
Other DBs
NCBI-ProteinID:
BAG25104
LinkDB
All DBs
Position
685346..687832
Genome browser
AA seq
828 aa
AA seq
DB search
MTSMAEEIDLFKTPTEPSFFIGQVQSEIFTSPDSFFKVLIVSVEEANFDWHEPEITVTGS
FGDLSDDQTYRFEGKIVEHPRYGQQFQATSYHVNRPTSKDGLIDFLSGKQFTGIGKKTAE
KIVDKLGTDAINKIIADPHVLDELKLRKAVKDSLVDNLRAHQGMDQIIIGLNDLGFGANL
SSAIFDKYGEETLHIINENPYQLAAEIDGISFNRADQVAQKLGIATDDSRRIDAAIIQTL
DDLTMETGDTFTTTKPLLQQTIQLLAQGSGGRVSTDLIANQIVELEKNQAISYADEKIYP
TALYNAEWQIADHLHRLLTVDQEKVPATTIEKTVTKVADQSGITYDQVQKEAIKTALNSK
VMLLTGGPGTGKTTIIKGIVASYAKIHDLSLDVNEYKEKSFPVLLAAPTGRAAKRMSEAT
DLPASTIHRLLGLNGREMPTDMNARDLEGSLLIIDEMSMVDTLLFKTLIQAVPTSMHVVL
VGDKDQLPSVGPGQVFHDLLDFAELPKVELTNIHRQAADSTIIPLAHAIKEGKLPSDLTN
KMPDRSFISCHANQVPSVVQQIIDLSKKRDYSANDIQILAPMYRGQAGIDRLNELAQQAY
NPPANGKQEVDFRGLTFRVGDKVLQLVNVPEKNIFNGDIGKITAIESGRTVGKKNESITV
DFDGNEVSYSRMEWNQLRLAYCISIHKAQGSQFKMVLLPIVQQFSRMLQRNLLYTAITRA
AEKLVLIGEPYAAVTSVKNEAVNRKTSLVDRLGRVWNRHGELKSNLDHQTDSLTKELASS
QPVQKQTEQLINNDAQQYILTADLINSDTIDPLIGMENISLQSLHQVK
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgacttctatggctgaagaaatcgacctatttaagacgccaacggagccgtcttttttt
attggtcaggtacaatctgagatttttactagtccagattcgttttttaaggttttaatt
gtctcggttgaagaagcaaattttgattggcacgagccggagattactgtaacgggaagt
tttggtgatcttagtgatgatcagacttaccgctttgagggaaaaattgttgagcatccg
cgatatgggcaacagtttcaagcgacttcttaccatgtcaatcggcccacaagcaaggat
gggttaattgatttcttgtctggaaaacagtttaccggaattggaaaaaagacggctgaa
aaaattgtcgataaattaggaacggatgcgattaataaaattattgctgacccccatgtt
ttagatgaattaaaactccgcaaagcagttaaggattcattagttgataatttacgagca
caccaggggatggaccagattattatcggcctaaatgatctcggctttggcgctaacctt
agtagtgcaatttttgacaagtacggagaagaaactctgcatattattaatgaaaatcct
taccaactcgctgctgagatagatggaattagctttaatcgggctgatcaggtggcacag
aaattaggaatcgccacggatgattcacgtcgaattgatgccgcaattatccagacgctt
gatgacttgacaatggagactggtgatacatttactacaacaaaacctcttctgcagcaa
actatccagttgcttgcccaaggaagtgggggtcgtgtttcgaccgatttaattgccaac
caaattgttgagctagagaaaaatcaagcaattagttatgcggatgaaaaaatttatcca
actgccctttataacgcggaatggcaaattgctgatcacttacatcgtcttcttaccgtt
gaccaggaaaaagtaccagcaacgactattgagaaaacagttacgaaggttgccgatcaa
tcggggataacctatgaccaagttcaaaaagaggccatcaaaacagccttaaatagtaaa
gttatgcttcttacgggaggcccaggaacgggaaaaacaacaattattaaagggattgta
gcaagttatgcgaaaattcatgatctttcattggacgtaaatgaatataaagaaaagtca
tttcctgttttactagctgctcctacaggccgtgctgctaaacgaatgagtgaagctact
gatttaccagcaagtacaattcaccgcttgctagggcttaatggccgggaaatgccaact
gatatgaatgcccgcgatttagaaggctcgttattgattattgatgaaatgtcgatggtc
gataccctcttgtttaagactcttattcaagccgtccctacttctatgcatgtagttttg
gtaggtgataaagaccaattaccatctgttggtcccgggcaagttttccatgatcttctt
gactttgcagaactgcccaaagttgaactgaccaatattcaccgccaggctgctgattca
acaattatcccattagctcatgctatcaaagagggtaagctaccatcagatctaacgaat
aaaatgccagatcgatcatttatctcatgccatgctaaccaagtgccaagtgtggttcaa
caaattattgacctttctaaaaaacgagattattccgcaaatgatattcaaatcttggca
ccaatgtaccgtggacaggcagggatcgatcgtttgaatgagcttgcacaacaggcgtat
aatcctccagctaatggaaagcaagaagtcgattttaggggactaacttttcgtgttgga
gataaggttctgcaactcgttaatgttccagaaaagaacatttttaatggtgacattgga
aaaatcacagcaattgaaagcggtaggacagtcggtaagaaaaatgaatcaattactgtc
gattttgatggtaatgaagtgagttatagccgcatggaatggaatcaattacggttagct
tattgtatttcgatccataaagcacagggaagtcagtttaagatggttcttttgccaatt
gttcagcagtttagccggatgcttcaacgaaatcttttatatacagcgattactcgtgcc
gcagaaaagctagttttgatcggtgagccatatgcggctgtgactagtgtaaaaaatgaa
gcagttaaccgaaaaacttctttggttgatcgcctcggtagggtttggaataggcatggt
gaactaaaatcaaacttagatcatcaaacagattcattaacaaaagaacttgctagttcc
caaccagttcaaaaacaaactgaacaattaataaataatgatgctcagcaatatattcta
acagctgatctcattaattcagatacaattgatccattaatcggaatggaaaatattagc
ttacaaagtttgcatcaagtcaaataa
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