Limosilactobacillus reuteri subsp. reuteri JCM 1112: LAR_0626
Help
Entry
LAR_0626 CDS
T00735
Name
(GenBank) metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lrf
Limosilactobacillus reuteri subsp. reuteri JCM 1112
Pathway
lrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAR_0626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrf03019
]
LAR_0626
Messenger RNA biogenesis [BR:
lrf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAR_0626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
BAG25142
LinkDB
All DBs
Position
725968..727749
Genome browser
AA seq
593 aa
AA seq
DB search
MDNNIKIIPFGGVRENGKNMYAVEIEDQIFILDTGLKYPENELMGIDVVIPDWEYLREHK
DKIVGVFLTHGHADSIGALPYFLMDFNVPVFGSEMTIALAKLAVKNHKEVKKFNDFHVVD
ASTAIDFNDVTVSFFQTTHTIPETLGVVLETKAGNIVYTGDFKFDQTAKKGYQTDLARLA
EIGSQGVLALLSDSAGAGITGASAREQDIGDYIKETFKYQNGRIIVASVASNIMRVQQII
NAAVAVGRKIVLSGKDIEQIIDTAMSLGKLHLPDDLFISRKEAEKLEPNQVVILETGKMG
EPIKSLQQIANGDNPNLQLTSTDLVFVTTTPSYAQETEVQKTKDMIYRTGAEVKFISDDL
NPSGHANQNDEQLMLNFMKPKFFIPIQGEYRLLDRHAELAEEVGIPKENIFLVNKGDVLT
YKNGKFHVGEHIDVSNTMIDGTGVGDIGNIVLRDRRVLSEDGIFVVVATIDRKKKKIVAR
PQITSRGFVFVKTNRQLMQQSADLVEKIVQENLDQKEFDWSHLKQDVRDKLNRFLFDQTK
RHPVILPVIMEINQHQKKIKNNVEKKEEKSAKSRSTKEHHRGRGKKRMAKEKK
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggataataatattaaaattattccttttggtggtgtacgcgaaaatggtaaaaatatg
tacgccgttgagattgaagaccaaattttcattttggatacggggttaaagtatccggaa
aatgaattaatgggaatcgatgttgtcattcctgactgggaataccttcgtgaacataag
gacaagatagtcggagtattcttaacacatggacatgcagattcaattggggcacttccg
tatttcttgatggactttaatgttccggtatttggaagcgagatgacgattgccttagca
aaactggcagttaaaaaccataaggaagttaagaaatttaatgattttcatgttgttgat
gcttcaacagcaattgattttaatgatgttacagtttcgttcttccaaacgacccatact
attcctgaaactttaggggttgttttagaaactaaagcaggaaatattgtttacactggt
gattttaaattcgatcagacagctaaaaaaggttatcaaacagaccttgctcgtttagca
gaaattggatcacaaggtgtattagcacttttaagtgattctgctggtgctggaattacg
ggtgcgtctgctcgtgagcaagatattggagactacattaaagaaacatttaaatatcaa
aacggtcggattattgttgctagtgtagcttcaaatattatgcgcgtacagcagattatc
aatgctgctgttgccgttggtcggaagattgttttatctggtaaagatattgagcaaatc
atcgatacagcaatgtctttgggaaagctgcacttaccagatgacttattcattagtcgc
aaggaagcagaaaaacttgaaccaaatcaagttgttattttggaaactggtaaaatgggc
gaaccgattaagtcattacagcaaattgcaaacggtgataatcctaatttacaattaacg
agtaccgatcttgtctttgttactactactccttcttatgcgcaggagactgaggtacaa
aagacaaaagatatgatttatcgtacgggagcagaagttaagtttatttctgatgatttg
aatccttctgggcatgctaaccaaaatgatgaacagttaatgttgaacttcatgaaaccc
aagttcttcattccaattcaaggcgaataccgtctgttagatcgtcatgcagaattagca
gaagaagtaggaattccaaaagaaaatatcttcctcgttaataagggtgatgttctaacc
tacaaaaatggtaaattccatgttggagaacatattgatgtaagcaatactatgattgac
gggacaggtgtcggtgatatcggtaatattgttttacgagatcggcgcgtcctatcagag
gatgggatttttgttgtggtggcaactattgatcggaaaaagaaaaagatcgttgctcga
ccacaaattacgtcacgaggattcgtgtttgtaaagactaaccgtcaactaatgcaacag
agtgctgacttagttgaaaagattgttcaagaaaatctagatcaaaaggaatttgattgg
agtcacttgaaacaagatgttcgcgataaattaaaccgattcttgtttgatcaaactaaa
cggcatccagttattttgccagttattatggagattaatcaacaccaaaagaagattaaa
aacaatgttgagaagaaagaagagaaatctgcaaagtcacgttcaacgaaagaacatcat
cgtggtcgtggtaaaaaacgaatggcaaaagaaaagaagtag
DBGET
integrated database retrieval system
