Limosilactobacillus reuteri subsp. reuteri JCM 1112: LAR_1401
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Entry
LAR_1401 CDS
T00735
Name
(GenBank) DNA-directed RNA polymerase beta-prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lrf
Limosilactobacillus reuteri subsp. reuteri JCM 1112
Pathway
lrf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lrf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LAR_1401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrf03021
]
LAR_1401
03400 DNA repair and recombination proteins [BR:
lrf03400
]
LAR_1401
Enzymes [BR:
lrf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LAR_1401
Transcription machinery [BR:
lrf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LAR_1401
DNA repair and recombination proteins [BR:
lrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LAR_1401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BAG25917
UniProt:
B2G8Y5
LinkDB
All DBs
Position
complement(1576696..1580331)
Genome browser
AA seq
1211 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKQGLFDERIFGPTKDYEC
ACGKYKRIRYKGRVCDRCGVEVTSAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVLDPGDTPLEKKQLLTEAEYRDKKAEYGDRFKAEMGAAAIQKLLA
DVDLEKEAAELKEELKEATGQKRTRAIRRLDILEAFIKSGNKPEWMVMDVIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLKLQAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLKLNQMGLPVP
MALELFKPFIMHELVKRGLSANVKSAKRKIDRSDDDVFDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVSGKSMRLHPLVCSAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHIL
SPRDGEPIVSPSQDMVIGNYYMTTEDKGREGEGMIFKDTDEAELAYRNDYVSLQTRVGVQ
VSAFPEKPFTDDQRGKIMVTTVGKLLFNRIMPKDFAYINEPTDANIQNGVDDRFFLEPGQ
DIHEYLENAPLVPPFKKGFLSDLIAEVYKRYKVTKTSQFLDRIKDLGYYESTISGLTTAM
SDIHDLPEKPEILDKAQKQVTLITKQFRRGLITDDERYERVIGAWNDAKDEVQNKLIEHM
DIHNPINMMSDSGARGNISNFTQLAGMRGLMASPNGKIMELPVKSNFYEGLSVLEMFISS
HGARKGMTDTALKTANSGYLTRRLVDVAQDVVVREKDCGTDRGLEVTAITNGNEMIEPLY
DRIMGRYTMKSVFDPKTGEKIVGKNVLIDEEMAQKIVDAGVKKVTIRSAFTCNTEHGVCE
RCYGRNAATGDRVEAGEAVGTVAAQSIGEPGTQLTLRNFHTGGVAGNDDITQGLPRIQEI
VEARNPKGRATITEVTGEVVSIEENPAERTKDITIKGETDTRTYTLPITARMKVAEGDFI
HRGAPLNEGSIDPKELIQVRDVLSTETYLLSQVQGVYRMQGIDLLDKHVEIMIRQMMRKV
RVMDPGDTDLLPGQLMDISQFRDANKDTLVAGNIPATARPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMSAYRNIKPKEVSVAAYSIKDI
EAKLKEEDKQN
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtcaataaatttgaaagtatgcagatcggtctggcatctccagataagatc
cgtagttggtcatatggggaagttaaaaagcccgagactattaactaccggacattaaag
ccagaaaagcaaggtctgtttgacgaacgaatctttggcccaaccaaggattacgaatgt
gcgtgtggaaagtacaagcgtatccgttacaaaggtcgtgtttgtgaccgttgtggtgtt
gaggttactagtgcaaaagttcgtcgtgaacggatggggcacattgaattagctgctcct
gtatctcacatttggtactttaaaggaattccaagtcgaatggggcttgtattagatatg
agtccacgttcgcttgaagaagttatttactttgcttcatatgttgttcttgatccaggt
gatactccacttgaaaagaaacaacttttaactgaagctgaatatcgtgataaaaaagca
gaatatggtgaccggttcaaagctgaaatgggagctgctgctattcaaaaacttttagct
gatgttgacttagaaaaggaagctgctgaattaaaggaagaattgaaagaagctactggt
caaaaacggactcgtgctattcgtcgtcttgatattcttgaagctttcattaagtcagga
aataagcctgaatggatggttatggatgtaattccagttatgccacctgacttgcggcca
atggttcaacttgaagggggacgttttgctacctccgatttgaacgatttatatcggcgg
gttattaaccgtaataaccggttgaagcgacttcttaaattacaagcacctggaattatt
gttcaaaatgaaaaacggatgcttcaagaagctgttgatgcattaatcgataatggtcgc
cgcggacgtccagtagctggaccaggtaaccgtccattgaagtcactttctcacttactt
aaaggtaagcaaggacgtttccgtcaaaacttgcttggtaagcgtgttgactactctggc
cgttccgttattgatgttggtccatcattgaagttgaaccaaatgggattaccagttcca
atggcacttgaattatttaagccatttattatgcatgaattggtaaagcgtggtctttcc
gctaacgttaaatctgctaagcgtaagattgatcgcagtgatgatgatgtctttgatgta
ttggaagacgttattaaggaacacccagttctattgaaccgggcccctactcttcaccgg
ttaggtatccaagcgtttgaaccaatcttggtttctggtaagtcaatgcgtcttcaccca
ttagtatgttcagcatataacgctgactttgatggggaccagatggctattcacgttcca
ttatctgatgaagctcaagcggaagcccgtttgttaatgcttgctgctcaccatattctt
agtcctcgtgacggagaacctattgtttcaccatcacaggatatggttattggtaactac
tacatgactactgaagataagggtcgtgaaggtgaaggaatgatcttcaaggatactgat
gaagctgaacttgcttaccgcaatgactatgtttcattacaaacccgtgttggagttcaa
gtatctgcattccctgaaaagccattcactgatgaccaacgaggcaagatcatggtgaca
actgttggtaagcttcttttcaaccgaattatgccaaaagattttgcttacattaacgaa
ccaacagatgcaaatattcaaaatggtgttgacgatcgtttcttccttgaacctggtcaa
gatatccatgaataccttgaaaatgcaccattagttccaccatttaagaagggcttccta
tctgacttgatcgctgaagtatataagcgttacaaagttacaaagacgtcccaattctta
gaccgtattaaggacttaggttactacgaatcaactatttctggtttaactactgccatg
tctgatattcatgatttaccagaaaaaccagaaattcttgataaggcacaaaagcaagtt
actttaattactaagcaattccgtcgtggtttaattacagacgacgaacgttatgaacga
gtaatcggtgcatggaacgatgctaaggatgaggttcaaaacaagttaattgaacacatg
gatatccataacccaattaacatgatgtccgactctggtgcgcggggtaacatttcaaac
tttactcagttagctggaatgcgtggattgatggcatcaccaaacggtaagattatggaa
ttgcctgttaagtcaaacttctatgaaggactttcagtgttggaaatgtttatttcatca
cacggtgctcgtaaaggtatgactgatacagccttgaagactgccaactcaggttactta
actcgtcgtcttgttgatgttgcgcaagatgtggttgttcgtgaaaaagactgtggtact
gatcgcggacttgaagttactgctattacaaacggtaacgaaatgattgaaccgctttat
gatcgaatcatgggtcgttacactatgaagtctgtctttgatcctaaaactggtgaaaag
attgttggtaagaatgtccttattgacgaagaaatggctcaaaagattgttgatgccggc
gtaaagaaagtaactattcgttcagcatttacttgtaacactgaacatggtgtatgtgaa
cgttgttatggacgaaacgcagctactggtgaccgtgtagaagctggtgaagccgtcgga
actgttgccgctcaatcaattggtgaaccaggtactcagttaactcttcgtaacttccac
actggtggggttgctggtaacgatgatattactcaaggtcttccacgtatccaagaaatt
gttgaagcacgtaatcctaaaggtcgtgcaacaattacagaggttactggtgaagttgtg
tctatcgaagaaaaccctgctgaacggacgaaggatattacgattaagggtgagactgat
acccgaacttacactcttccaattacagcacggatgaaagttgctgaaggtgattttatt
caccgtggggcaccactaaatgaaggttcgattgatcctaaggaattaatccaagttcgt
gatgttctttctactgaaacttacctcttatcgcaagttcaaggtgtttaccggatgcag
ggtattgacttgttagataagcacgttgaaattatgattcgtcaaatgatgcggaaagtt
cgtgtcatggatccaggtgataccgaccttctaccgggtcaattaatggatattagtcaa
ttccgtgacgctaacaaggataccttagttgctggtaatattcctgcaacagctcgtcct
gttattcttggtattactaaggctgccttagagacaaacagtttcttgtcagctgcttca
ttccaagaaactacacgtgtattaactgatgctgctattcgtggtaagaacgatccatta
gttggattgaaagaaaatgttattattggtaagattattcctgcaggtactggtatgagt
gcttaccggaatatcaagccaaaagaagttagtgtagctgcttactcaattaaagatatt
gaggctaagttaaaagaagaagataagcaaaactaa
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integrated database retrieval system
