Lacticaseibacillus rhamnosus GG: LRHM_1001
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Entry
LRHM_1001 CDS
T02100
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lrg
Lacticaseibacillus rhamnosus GG
Pathway
lrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRHM_1001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrg03019
]
LRHM_1001
03400 DNA repair and recombination proteins [BR:
lrg03400
]
LRHM_1001
Enzymes [BR:
lrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRHM_1001
Messenger RNA biogenesis [BR:
lrg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRHM_1001
DNA repair and recombination proteins [BR:
lrg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LRHM_1001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
DUF763
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
BAI41528
UniProt:
A0A7S7FNG2
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All DBs
Position
1057447..1059228
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AA seq
593 aa
AA seq
DB search
MLLPQPATILKEKFGYDHFRAGQKQAIERIMTGKSTLVVMPTGGGKSLCYQVPAMILPGL
TLVVSPLIALMKDQVDALNDNAIPAAFINSTLDYREITARLEQARSGNIKLLYVAPERFD
ADWFLQQLGDMNISLFAIDEAHCISQWGHDFRPSYLNLANVAAQLPSQPPVIALTATATP
RVAQDICQRLMIPDDGVINTGFERDNLSFKVVRDQDEDRYLLDYLKLNVDQSGIIYASTR
KEVDRIYAFLQHKQLPVAKYHAGMTEKQRAANQEDFLFDRKPIMVATNAFGMGIDKSNVR
FVIHAQIPKDLESYYQEAGRAGRDGLPSEAILLFRPQDLQVQRFFIEQSEGDEAHQRRQY
DKLKVMERYANTDQCLQQFILNYFGQTGTAPCGRCSNCLDDRESVDVTIDAQKVLSCVVR
LHERFGKGIVAQVLAGAHNQRVLSFHLDQLSTYGLMKNRRQRDITTFIDFLTAGGFLETR
GGQYPTLGLTAKGAEVLRGQITVFQKTAQKVTQTLEVDDTVFQELRSTRRQLAEQQHLPP
YMIFSDKTLKAIGNAMPKTLDELLAVKGVGQAKLDKYGQIFLDVLKAIQTEKA
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgcttttgccgcagccagcgacgattttaaaagaaaaatttgggtacgatcactttcga
gccggtcaaaagcaggcaattgagcgaattatgaccggcaagagcacgctggtcgtgatg
cctaccggtggcggcaagtctttgtgttatcaggtgccggcgatgattctgccaggcttg
acgctggtcgtttcgcctttaatcgctttaatgaaagatcaagttgatgcgttaaacgac
aatgccattccggcggcgtttattaatagcacgttggattatcgtgaaattactgcacgt
ctggaacaggcgcgcagtgggaacattaagttgttatatgtggcgccggaacggtttgat
gcggattggttccttcaacagctcggtgacatgaatatctcgctttttgctattgatgaa
gcacactgtatttcacagtggggacatgattttcggccgagttacctcaacttggctaat
gttgcggctcaattaccctcgcagccgccggtcattgccttaactgcgacggcgacaccg
cgggttgctcaagatatttgccaacgcttgatgatcccggacgatggggtcatcaacaca
gggtttgaacgtgacaacctgagtttcaaagtggtgcgcgatcaggatgaggatcggtac
ttgttggattatcttaaactcaatgttgaccaatctggcattatttatgcaagtacgcgc
aaagaagtcgatcggatttatgcgtttttgcagcataagcagttgccggtagccaaatat
cacgccggcatgactgaaaagcaacgtgctgctaatcaggaagactttttgtttgatcgt
aagccgattatggtcgctaccaacgcgtttgggatggggattgataaaagtaacgttcgc
ttcgtgattcatgctcagattccgaaagatttggaatcgtattatcaagaagcaggtcgc
gccggtcgtgatgggttgcctagtgaggcgatcttgttatttagaccgcaagacttgcag
gtgcaacggttttttattgaacagtctgaaggtgacgaggcgcatcaacggcggcagtat
gacaaacttaaagttatggaacgctatgccaacaccgatcagtgtctgcagcagtttatt
ttgaactattttggtcagactggcactgccccgtgtggacgttgttcgaactgcttagat
gatcgtgaatccgttgatgtgaccattgacgcgcagaaggttttgtcgtgcgttgtccga
ttgcatgagcggtttggtaaaggcattgttgcccaggtcttggctggcgcccacaatcag
cgcgttttgtcgtttcacctcgatcagttgtcaacatatgggctgatgaaaaatcggcga
cagcgggatattacgaccttcattgatttcctgacggccggtggctttctggaaacgcgt
ggtggtcagtatccaacgcttggcttaaccgcaaaaggcgctgaagtgttacgcgggcag
ataaccgttttccaaaagaccgcgcaaaaagttactcagacgcttgaagtggatgacacg
gtcttccaagaactgcgtagtactcgccggcaattggcggagcagcagcatttaccgccg
tatatgattttttccgataagacgttaaaagcgattggcaatgcgatgccgaaaacgttg
gatgagttgctggcggttaaaggggttggccaggcgaaacttgataagtatgggcagatt
ttcttggacgtattgaaggcgattcaaacggagaaagcgtga
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