Lacticaseibacillus rhamnosus GG: LRHM_2419
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Entry
LRHM_2419 CDS
T02100
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lrg
Lacticaseibacillus rhamnosus GG
Pathway
lrg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LRHM_2419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrg03400
]
LRHM_2419
Enzymes [BR:
lrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRHM_2419
DNA repair and recombination proteins [BR:
lrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LRHM_2419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
DUF7398
Motif
Other DBs
NCBI-ProteinID:
BAI42946
UniProt:
A0A809NH17
LinkDB
All DBs
Position
complement(2577125..2580652)
Genome browser
AA seq
1175 aa
AA seq
DB search
MNLIDMVQADPELSALWPKLETGRHLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHA
DELAADLSSLLGDALVYDFPVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGIIVTSLA
GYKRILPAPAAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDI
YPLNQDDPIRIELFDTEIDSIRSFDIATQRSLKKLDQIAIAPATDMIASDQVLTDAGARI
GKQATAYKAKVKDAAAKQAITDGLLTTSQQLQALERPENLALYAPELYPEHHRITDYLAS
DALVAFDDYSRLLDSDTNLVQDTAEWYSQLQAEGRLLPKTPNPTIQALNQRDRHPRLYLS
LFQKGMGQLRLDSLTNVPSRNVQQFFSQMPLLKTETDRWVKQKQTVVFLVSDKNRLEKLS
ATLHDFEISNVVTEPNQLLSGKVQLTDGSLKNGFELPDLKLVVVTEHELFNARQRRRARH
QTLANTERLRSYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIP
VDQLNLVQKYVSADGKTPNVNKLGGTEWQKTKRIVAARIEDIADELIDLYAKREAEKGYA
FGPDDDLQQKFEDEFPYPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAA
FKAVDYGKQVAILVPTTILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNG
TIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRT
LNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDM
ERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANT
LIIENADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSG
FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNKRRGLKTVQKTDAEIDLG
LEAYLPTDYVADSRQKIELYKRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLK
RFADLAWVDHVQKNDQKMTVVLTPQATAKAQGEPIFKALAATTLKAQVAIADGKLTVTLA
VPATMKEDEWLGQLTAFMKGLLAVVNPQPEKKPAA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaatcgacatggtgcaggcagatccggaactgtcggcattatggcctaagctc
gagacaggccgccatttggtgacaggactatcaggttcggccaagacggtcttttttggc
gcactcttgcagcagcaaaaaaagcagctgctgattgtcgaaaataatcggtttcatgca
gacgagttggcagccgatttgagtagtttattaggcgatgcgcttgtttatgattttccg
gttgaagatgtattggcggctgaagtggcggtcagttcaccggaaacccgcaacgaccgg
atcaacgcactgacctttattcaaagcggccaaccgggcattattgttaccagcctggca
ggatataagcgaattttacccgcaccggctgcatgggcggcaagtgagttggttgttgat
atggattcagagcttgatccgcaaacggtcgccaagcagcttgtggcgatgggttatcgg
cgtgattcattagtgagtgcgcccggccaatttgccattcgcggcgggattatcgatatt
tatccattaaatcaggatgatccgattcgcattgagttgtttgatacggaaatcgactcg
attcgcagcttcgacattgctacccagcgcagtttgaaaaagcttgatcagattgccatt
gcaccggctactgacatgatcgcttccgatcaggtgctgaccgatgccggtgcgcgaatc
ggtaagcaggcaacagcttacaaagcgaaagtcaaggatgcagcggcaaagcaagcgatt
accgatggcttgttgacgaccagccagcagttacaagcattagaacggccagaaaacctg
gcattgtatgcgccggagctgtatccggaacatcaccgcattactgattatctggccagt
gatgcgctggtagcgtttgatgattacagtcgcctgttggatagtgatacgaatttggtg
caggatacggctgaatggtattcacagctgcaagcggaaggccgtttgttgcctaaaaca
cctaatcctacgatccaagcgcttaatcagcgtgatcggcatccgcggctttacctgagc
cttttccaaaaaggaatgggtcagttgcggttggatagcttgactaacgtgccgagtcgc
aatgttcaacaattctttagtcagatgccattgctcaaaaccgaaacggatcggtgggtg
aaacaaaaacagaccgtggttttcctggtttccgataagaatcgcttggagaaattaagt
gccaccttacatgactttgagattagtaatgtggtgaccgaacctaatcagctgctttca
ggaaaagttcagttaaccgatggcagtctgaagaacggctttgaattgccggatttgaag
ctggtagtggtgaccgaacacgagctgttcaatgctcggcagcggcggcgggctcgccat
cagacgttggcaaatacggaacgcctccgcagctataatgaattaaagcctggcgattat
gttgttcatgtcaaccacgggattgggcaatataccggcatggagacgcttgaagttgac
ggtgtccatcgcgattacatcaccatcgtttatcgcaacaatgacaaactgtttattccg
gttgaccaattaaatctggttcagaaatatgtttctgcagatggcaaaacgcctaacgtc
aataagcttggcggtaccgagtggcaaaagaccaaacgcatagtggcggctcgaatcgaa
gacattgccgacgagctgattgacttgtacgcaaaacgggaagcggaaaaaggttatgct
ttcgggccggatgatgatctgcagcaaaaatttgaagatgagtttccttatcccgagacg
cctgatcaactgcgatcggcaaaagaaattaagcgggatatggagaaacccaaacccatg
gatcgcttgcttgtcggggatgtgggctttggcaaaaccgaagtcgcgttacgggcagca
tttaaagcagttgactatggtaagcaggtcgcaattttagtaccgactaccatcttggcg
cagcagcattttgacaccatgaaggatcgatttgccgattttccggttaaaatcggcttg
ttatcgcgcttccagacaccgcaccaaaataaaatgacgattaaaggactcaaaaacggc
acgattgacattgttgtcggcacccatcgactgctttctaaagatgtggcatttcgtgac
ctcggtttgttggtgattgatgaagagcagcgttttggggtgaagcacaaggaacggatt
aagcaattgaaaagcaatgtagatgtgttaacgctgacggcaacgcctattccacgtacg
ctaaacatgtcgatgctaggcgttcgcgacttaagtgtcattgagacgccaccgacaaat
cgctatccgattcagacctttgtaatggaacaaaaccccggggtcattcgggaagccatc
gaacgcgaaatggaacgcggtggtcaggtcttttacctgcataatcgggtggaggatatg
gagcgaaccgtgagtcaattggaagagctagtgcctgacgccagcatcgggtatgcccac
ggccagatgacggaaacccagctggaaaatgtcatctatgattttctgcatggcgcgtat
gacgtattagtgaccacgaccattattgaaaccggggtcgatatgccgaacgccaatacg
ctgattattgaaaatgcggatcattatgggttgtcccagttgtatcagttgcgcggacgc
attgggcggtccagccgcgttgcatacgcttatttcatgtatcaaccgatgaaggtactt
aatgaagtggccgaaaaacggctccaggcgattaaggatttcacggaattaggtagcggc
tttaagattgcgatgcgtgatttgtcgattcgcggtgcggggaacttgttaggcaaacaa
cagcatggatttattgattcggttgggtatgacttgtacacgcagatgttacaagaggcg
gttaacaaacgccgcggacttaaaactgttcaaaaaaccgatgcggaaatcgacttgggt
cttgaagcttacctgccaacggattatgttgccgattcgcgccagaaaattgaattgtac
aaacggattcgtgaagcagacagtgatgaagccgaaaccgagattagtgaagatttgatt
gatcgattcggcgattatccacagccggtgacgaatcttttggcaatcgcacatctgaaa
cgtttcgctgatttggcttgggtggatcacgtccagaaaaacgaccagaaaatgacggtg
gtgttaaccccgcaagcgactgctaaagcacaaggcgaaccgatctttaaggcgttggcg
gctacgactttgaaagcacaagtagcaattgccgatggaaagctgacggtaacgctcgct
gtgccagcaaccatgaaagaagacgagtggctagggcaactaactgctttcatgaaggga
ttgctggcggttgtgaatccgcagccggaaaaaaagcctgccgcctaa
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