Lacticaseibacillus rhamnosus GG: LRHM_2435
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Entry
LRHM_2435 CDS
T02100
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lrg
Lacticaseibacillus rhamnosus GG
Pathway
lrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRHM_2435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrg03019
]
LRHM_2435
03009 Ribosome biogenesis [BR:
lrg03009
]
LRHM_2435
Enzymes [BR:
lrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRHM_2435
Messenger RNA biogenesis [BR:
lrg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRHM_2435
Ribosome biogenesis [BR:
lrg03009
]
Prokaryotic type
rRNA helicases
LRHM_2435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAI42962
UniProt:
A0A7S7FQY3
LinkDB
All DBs
Position
complement(2598996..2600504)
Genome browser
AA seq
502 aa
AA seq
DB search
MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPIL
QHIDKADRSIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLADHP
QIVVGTPGRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQTLLF
SATMPAAIMRLTNKFMKEPVIVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPD
LALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTIEDLTKK
RMLPMKPPTAEEALMGQISSGLATIKEQVEANDTEKYEAMAETLLENYTPLQLVSAYLKA
VSPDDASAVPVKITPERPLPRRGRNNHGHGNNRGGYKGGYKGKRRDGGYQGNRDGKRSYD
KKRNFGDKRKNVKRNFKIRTGE
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaaagaactaggtttggatcatgatctcttaaaggcaatcgcccagtcaggt
tttgaggaagcgacgccgattcaagcggagacgatcccactggttctggaaggcaaagat
gtgatcggtcaagcccagaccggtaccgggaaaacggcagcatttggcttgccaattctg
caacacatcgataaagccgaccggagtatccaagcattggtcatttccccaactcgggaa
ttggcgattcagacccaagaagagctttaccgtttaggccgcgacaagaagatcaaggtt
caggctgtctatggcggcgctgatattcgccgccagattcgtcagcttgctgaccatccg
caaattgtggttgggacacctggtcggattcttgatcatattggtcgtcataccttaaag
ttggaacaccttgataccttggtgttagatgaagccgatgaaatgctcgatatgggcttc
attgacgatattgaaaagattgttgaacaaatgccgaccgagcgtcaaacattactgttc
tccgcgacgatgccggcagcgatcatgcgcttaaccaacaagttcatgaaagaacctgtg
attgtcaagattaaggctaaggaactgacagcagataccgttgagcaatattatgttcgg
gccaaggactatgaaaagttcgatgtcatgacacgactgtttgacgttcaggatccggac
ttggcactgatttttggacggaccaagcgtcgtgttgacgaactgacacggggattaaag
gcacgcggctatcgggctgaaggtattcacggcgatttaacccagcaaaagcgaatgagc
gttttgcggcagttcaagagcggccaattggattttctggttgcaaccgatgtcgctgct
cgtgggttggacatttctggtgtcacccatgtttacaactatgatatcccgcaagatccg
gattcctatgttcaccgtatcggtcggacgggacgcgccggacataaaggggtatccgta
acctttgtcacgccaaatgaaattgaatatctgcacaccattgaagatctcaccaagaag
cggatgttaccgatgaagccgccgacagctgaagaagcattaatgggccagatctccagc
ggcttagcaaccatcaaggaacaagttgaagctaacgataccgaaaagtatgaagcaatg
gctgaaaccttgttggaaaactacaccccgttgcagctggtttcggcgtatctcaaggca
gtcagccctgacgatgcgagtgccgttccggttaaaattacaccagaacgtccattacca
cgccgcggccgcaacaatcacggccatggcaacaatcgtggcggttataaaggcggctac
aaaggcaagcgacgcgatggcggctatcaaggtaatcgcgatggcaagcgcagttacgac
aagaagcgcaactttggcgacaaacgtaaaaacgttaagcgtaatttcaaaatccgtacg
ggtgaataa
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