Lacticaseibacillus rhamnosus GG: LGG_00328
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Entry
LGG_00328 CDS
T00987
Symbol
srmB
Name
(GenBank) ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lrh
Lacticaseibacillus rhamnosus GG
Pathway
lrh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LGG_00328 (srmB)
09124 Replication and repair
03420 Nucleotide excision repair
LGG_00328 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrh03021
]
LGG_00328 (srmB)
03036 Chromosome and associated proteins [BR:
lrh03036
]
LGG_00328 (srmB)
03400 DNA repair and recombination proteins [BR:
lrh03400
]
LGG_00328 (srmB)
Enzymes [BR:
lrh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LGG_00328 (srmB)
Transcription machinery [BR:
lrh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LGG_00328 (srmB)
Chromosome and associated proteins [BR:
lrh03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
LGG_00328 (srmB)
DNA repair and recombination proteins [BR:
lrh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LGG_00328 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD
DEAD_2
ResIII
PDDEXK_1
Helicase_C
ATRX_C
Motif
Other DBs
NCBI-ProteinID:
CAR86223
UniProt:
A0A809MT84
LinkDB
All DBs
Position
complement(330413..332797)
Genome browser
AA seq
794 aa
AA seq
DB search
MAHNRIGIREFVELTVRTGDLNPVTSNSNNTAMIGSQIHRKLQAAHRESDYEKEVYLKTT
VTVNDEDYQLEGRADGVWTENKTLTVEEIKTSARSWEECSQNTKDRYWAQARIYGHLLCQ
QRHQDHAVITLVYVQTSTDTVSRFTETKSAAELADDFTDLLDEFTAWLKLRSDIIKQRNA
SIATLKFPFPQYRTGQHEFAAAVYKAIYSRARLFVQAPTGTGKTISTLFPTIKAMGSGLI
QRAFYLTAKQSTRRVAEQAIALMADVGLRAKSITLTAKDTITFADEPDDPSQNPYMLGYY
DRLKPALHDLLEYEDQLTRSVIESYARKHTLDPFEFSLDASLFCDVVICDYNYLFNPLVF
LQRFFSEADDSQFFLVDEAHNLVSRARDMYTASLTNQDFINLKQALAPFKGTALTKVRRT
MTRIVTTMNTLADQLLNGQSLIFQAAPLDDLAQVLTRFTETVHDWLAEPPTPALQPAVEL
VLPVFFLANQYLRIGDFYDDTFKTEIAKEHDTIMIKMLCLDPSHFVDDALKKGRGAVLFS
ATLSPMPYFQKLLGGAEHSLAYTLPSPFTPDNQAIIVDASVHTTYRRRTQDLPQLIASLT
TLVRAKAGHYLFFFPSYAYLKMAHEAFTAANPDLKTCVQENAMNESERQAFLDHFKAGSE
PVIGFAVLGGIFAEGIDLKGTQLIGVAIVSVGLPGINPETDQLRAYFDHDAGQGFAYAYQ
LPGFNNVLQAGGRVIRGAKDVGVILLIDERFITPRYARLFPDHWTHAQVSYNPTQLAQLL
THFWEAHHENPTHA
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggctcataaccgtatcgggattcgcgaatttgtcgagttaaccgttcgtaccggtgat
ctaaatccggttaccagtaactcaaataacaccgccatgatcggcagccagattcaccgc
aagcttcaagcagcgcatcgggaatcggattatgaaaaagaagtctatttaaaaaccacc
gttaccgtcaatgacgaggattatcaactggaaggccgtgccgatggggtttggaccgaa
aacaagacgctaaccgttgaagaaattaaaaccagtgcccgttcatgggaagaatgttcg
caaaacacgaaggatcgctactgggcgcaggcacggatttatggccacctactttgccaa
cagcggcatcaagaccatgctgttatcaccttggtttatgttcaaaccagtaccgacaca
gtcagccgcttcactgaaacaaaaagtgccgccgagttagctgatgatttcaccgatcta
cttgacgaattcactgcctggttaaaactgcgcagcgatattattaaacagcgaaatgct
tctatcgccacactcaaatttccgtttccgcagtaccgtactggccaacacgagttcgct
gccgctgtttacaaagccatatacagtcgcgcgcgtttgtttgtgcaggcgcccaccggt
actggcaaaaccatttcaacgcttttcccgaccattaaggctatgggtagtgggttgatt
cagcgcgctttttatctgacagccaagcaaagtacacgtcgggtggcggaacaggcaata
gcgctgatggcagacgtcggacttagggcaaaaagcatcaccttaacagctaaagacacg
attaccttcgccgatgagcccgatgaccctagtcaaaatccctatatgcttggctattat
gatcgcctgaaacccgcactgcatgatcttttggaatatgaagatcaactcacccgatct
gtgattgaatcctatgctcgcaaacacacactggatccatttgaattttcgctagatgcc
agtttgttttgtgatgtggtgatttgtgattacaactatttattcaatcccttggttttt
ttgcagcgattcttcagtgaagccgatgacagtcagtttttcctggttgatgaagcgcat
aatcttgtcagccgggcgcgcgatatgtataccgcaagcctgaccaatcaggactttatc
aacctcaaacaagccctcgccccgttcaaaggaaccgcattaaccaaggtacgccggacg
atgacgcgaattgtcaccacgatgaatacccttgctgatcagctactcaacgggcagtca
ctgatctttcaagcagcaccgctcgatgatctagcgcaggtgttgacccggtttaccgaa
acggttcacgactggctggcagaaccgcccacccccgcgctgcagcctgctgtcgaactt
gttttaccagtgttttttctcgctaatcagtatttacgtattggtgatttttatgacgat
accttcaaaaccgagattgccaaggaacatgacacgattatgattaaaatgctctgtctg
gacccgtcccattttgtcgatgatgccttgaaaaagggccgaggcgcggttttattttcg
gcaaccttatcaccgatgccgtattttcaaaagttactgggaggcgctgaacatagcctt
gcttacaccttgccatcaccgtttacgccggacaatcaggccatcattgtcgatgcgagt
gtccacaccacgtaccgccgccgcacgcaggatttaccgcagctgatcgcaagtctcacc
acgctggtcagggctaaagccgggcattatcttttctttttcccatcttatgcctatctg
aaaatggctcacgaggcgtttactgcggcaaatcccgatcttaaaacctgtgttcaggaa
aatgccatgaatgaaagtgagcggcaagcatttcttgatcactttaaggctggcagtgag
ccggtgattggttttgctgtgcttggcggcatttttgctgaagggattgacctcaaaggg
acgcaattgattggggtggcgattgtgtcagtgggcttaccgggcatcaatccggaaacc
gatcagttgcgagcatattttgatcacgatgctggtcagggctttgcctacgcgtaccag
ctgccaggctttaacaatgtcttgcaggcaggtggccgggtgattcgcggggccaaagat
gtcggcgtaatcctgctcattgatgaacgctttatcaccccgcgttatgcccgtctgttt
cctgatcactggacccacgcccaggttagctacaatcccacgcaattagcacaattactg
acacacttttgggaggcccatcatgaaaacccaactcacgcgtga
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