Lacticaseibacillus rhamnosus GG: LGG_02497
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Entry
LGG_02497 CDS
T00987
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lrh
Lacticaseibacillus rhamnosus GG
Pathway
lrh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lrh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LGG_02497 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrh03021
]
LGG_02497 (rpoC)
03400 DNA repair and recombination proteins [BR:
lrh03400
]
LGG_02497 (rpoC)
Enzymes [BR:
lrh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LGG_02497 (rpoC)
Transcription machinery [BR:
lrh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LGG_02497 (rpoC)
DNA repair and recombination proteins [BR:
lrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LGG_02497 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
DUF4090
Motif
Other DBs
NCBI-ProteinID:
CAR88392
UniProt:
A0A7S7FRU8
LinkDB
All DBs
Position
complement(2553387..2557049)
Genome browser
AA seq
1220 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRSLEEIIYFASYVVIDPGDTPMEKKQLLTEREYREKREEYGQTFNAKMGAEAIKELLQ
DVDLEKEVAELKEDLKSAQGQKRTRAIRRLDILDAFKESGNDPAWMVMDTIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKFYQCGVPRE
MALELFKPFVMRELVKRDMASNIKNARRKIDRQDDDVWDVLEDVIKERPVLLNRAPTLHR
LGIQAFEPVLVDGKSIRLHPLVCEAYNADFDGDQMAIHVPLSDEAMAEARMLMLAAHHIL
APKDGKPIVTPSQDVVLGNYYLTMEQKGREGEGMIFKDTNEVLMALQNGYVHLHSRVGIA
ANSFTDKPFTDEQKQKIMVTSVGKAIFNEIMPKDFPYLNEPTQDNIVNGVPDKYFIDKGE
DIHAYLEDAPLIDPFKKGFLSDIIAQVFKVYKVQRTSDLLDDMKTLGYTQSTNSGLTVGI
ADITNLKEKPEIVAAAHKKVATVSKQFRRGLITDDERHDRVIQIWNDAKDEIQQKLVDSF
DPNNPISMMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEVPVISNFREGLTVMEMFMST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLVVRAIREGNEMIEPLY
DRLVGRFTMKDVLDPKTGDVLVKRNTLMDEDMAQKIVDAGVEAVTIRSVFTCNTKHGVCQ
KCYGRNMATGEQVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGEDITQGLPRVQEI
FEARNPKGEAVITEVTGEVTAIDENPAEHTREITVKGETDTRTYSVPYASSVAVAEGDHI
NRGERLTGGSIDPKQLIKVRDVMATENYLLSEVQKVYRMQGVDIGDKHVEVMVRQMLRKI
RVMDPGDTNILPGTLLDIADFKEKNTQAIISGGIPATGRPVLLGITKASLETNSFLSAAS
FQETTRVLTDASIRGKNDPLVGLKENVIIGKIIPAGTGMATYRHEEPKSVGTVSDSVYSI
SDIEKQMKEKDNQQSDTDKQ
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtcaataagtttgaaagtatgcaaatcggcttagcctcgccggacaagatc
cgcagctggtcttatggggaagtcaaaaagcccgaaacgatcaactatcggaccctaaag
cctgagcgggacggcttattcgatgaacgtatcttcggaccgaccaaagactgggaatgt
gcctgtggtaagtacaagcgaatccgctataagggaatcgtttgtgatcgctgcggcgtt
gaagtcacccggtccaaggttcggcgcgaacggatgggtcatattgaattagctgcaccg
gtgacgcacatctggtacttcaagggaattcctagccggatgggtctggtactcgacatg
tcgccgcgttcacttgaagaaatcatctattttgcttcctatgttgtgattgatccaggc
gatacgccaatggagaaaaagcagctgctaaccgaacgcgaatatcgcgaaaagcgggaa
gaatatggacagaccttcaatgccaagatgggtgctgaagccatcaaggaattgttgcag
gatgttgatctcgaaaaagaagttgctgaattaaaagaagacctgaaatcagctcagggt
caaaaacggacccgtgcgattcgccgtctggacattttggatgcgttcaaggagtccggt
aatgacccggcatggatggttatggacacgattcctgttattccaccggatttgcggcca
atggttcagcttgaaggcggccggtttgcgacctctgatctaaacgacttgtatcgccgg
gtcatcaaccgtaacaaccgtctgaagcgtctgcttgatctcaatgcaccaagtattatc
gtgcaaaacgaaaagcgcatgctgcaggaagcggtcgatgccttgatcgataacggtcgg
cgcggacgcccggttaccggacctggtaaccgcccgcttaagtccttgtcccacatgttg
aaagggaagcaaggccgattccgtcaaaacctgttaggtaagcgtgtcgattactctggc
cgttcggttattgatgttggcccatggttgaagttttatcagtgtggtgttccgcgtgaa
atggccttggaactctttaagccatttgtcatgcgcgaactggttaagcgcgatatggca
agcaatattaaaaatgctcgccggaagattgatcgccaagacgatgatgtctgggatgtc
ctcgaagatgtgattaaggaacggccagtccttttgaaccgtgcgcctactttgcatcga
ctgggtattcaggcatttgaacctgtcttggttgatggtaagtccattcgcttgcaccca
ctggtttgcgaagcttataacgctgactttgatggtgaccagatggcgattcacgtaccg
ctgtctgatgaagcaatggcagaagcgcgcatgctgatgctggcagcccaccacattttg
gcacctaaagacggcaagccaatcgttaccccttctcaagacgttgtgttaggtaactac
tacctgaccatggagcagaagggccgcgaaggcgaaggcatgatcttcaaggataccaat
gaagtgttgatggcgttgcaaaatggctatgttcatctgcacagtcgtgtcgggattgct
gcgaactcctttacggacaaaccgtttactgatgagcagaaacaaaagattatggtgacg
agtgtcggcaaggcaatctttaacgagatcatgccaaaagacttcccgtatttgaacgaa
ccgactcaggacaacatcgtcaatggtgtgccggacaaatacttcatcgacaaaggtgaa
gatatccatgcttaccttgaagatgcacctttgatcgatccattcaagaaaggattcctg
tctgacatcattgcccaagtcttcaaagtttataaagttcagcggaccagtgacttgctg
gatgacatgaagacactcggctatactcagtcaacgaattcaggtttgaccgttgggatt
gccgacattacgaacctgaaggaaaagccagagattgtggcggcagcccataagaaggtt
gcaacggtttctaagcagttccgtcgtggtttaatcactgacgatgaacggcatgaccgg
gtcattcagatctggaacgacgctaaagatgaaatccagcaaaaactggttgattctttt
gacccgaacaacccaatttccatgatgtctgattccggtgctcgtggtaacatctcaaac
tttactcagcttgccggtatgcgtggtctgatggctgcgcctaacggagggatgatggaa
gttcctgttatctcgaacttccgtgaaggtctaaccgttatggaaatgttcatgtcaact
cacggtgcacgtaaagggatgaccgatacggcgctgaagacggctgactcaggctacctg
acccgtcgtttagttgatgttgcccaagacgtcattgttcgcgaagaagactgcggtact
gatcgtggattggttgttcgtgcaattcgtgaaggtaacgaaatgattgaaccgctgtat
gatcgtttggttggccggttcacgatgaaagacgttcttgatccaaagactggcgatgtg
ctggttaaacgcaatacgcttatggatgaagacatggctcagaagattgtggatgctggc
gttgaagccgttaccattcgttcggtctttacctgcaacacgaagcatggtgtttgccag
aagtgctatggccgtaacatggcaaccggcgaacaggttgaagtcggtgaagctgtcggg
accgtggcggcacagtcaatcggtgaaccaggtacccagctgaccatgcgtaacttccat
accggtggtgttgctggtggcgaagatatcacgcaagggctgcctcgtgttcaggaaatc
tttgaagcacggaatcctaaaggtgaagcggttatcactgaagttactggtgaagtaacg
gcaattgatgaaaacccagccgagcatacgcgtgaaattaccgtcaaaggtgaaaccgat
acccggacttacagtgtgccatatgcatctagtgtggccgttgcagaaggggatcacatt
aaccgtggcgaacgcttaactggtggttcaattgatcctaagcaattgatcaaggtgcgc
gatgtgatggcaaccgaaaactacctgctttctgaagttcagaaagtttaccgtatgcaa
ggggttgacatcggtgataagcacgtcgaagtaatggtacggcaaatgttacgtaagatc
cgcgtcatggatccgggcgacacgaatattctgccaggcaccttgctcgacattgcggac
ttcaaggaaaagaacacgcaagcaatcatcagtggcgggatcccggcaacgggtcgtccg
gtcttgctggggattaccaaggcttctctggaaactaacagcttcttatcagctgcttcc
ttccaagaaaccacgcgtgtcttaaccgatgcatccattcgcggcaagaacgatccactg
gttggtctgaaagaaaatgtcattatcgggaagatcattccggctggtaccgggatggcc
acctatcgtcacgaggaacctaagagtgtcggtacggtttccgacagtgtttattcgatt
tcagacatcgaaaaacagatgaaggaaaaagacaaccagcaaagcgacactgacaaacag
taa
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integrated database retrieval system
