Leminorella richardii: NCTC12151_01737
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Entry
NCTC12151_01737 CDS
T05503
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lri
Leminorella richardii
Brite
KEGG Orthology (KO) [BR:
lri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lri03019
]
NCTC12151_01737
Enzymes [BR:
lri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCTC12151_01737
Messenger RNA biogenesis [BR:
lri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC12151_01737
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_19
nSTAND3
NACHT
ResIII
PhoH
AAA_16
nSTAND_NTPase5
T2SSE
Zeta_toxin
ABC_tran
AAA_25
AAA_23
SRP54
DUF6145
Motif
Other DBs
NCBI-ProteinID:
SQI40785
UniProt:
A0A2X4XLI9
LinkDB
All DBs
Position
1:1822729..1826616
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AA seq
1295 aa
AA seq
DB search
MKSPFAALSERLSTLMLVDRQRLQRRLDGARRIRQSEKLTAAFAEIERDIERCQQRVLLR
QSAKPVIIYPPSLPVSEKRETLLDAIRDHQVVIIAGETGSGKTTQIPKLCLELGRGIKGT
IGHTQPRRLAARTVASRIAEELNTPLGEAVGYKVRFNDRIGDNTLVKLMTDGILLAEIQQ
DRLLMQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSRHFHQA
PIVEVSGRTYPVEVRYRPIVEGSEDGDRDQQQGILDAVDELMHEAPGDILVFMSGEREIR
DTAEALNRQNLPHTEVLPLYARLSNAEQNRVFQSHTGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSVRTKVQRLPIEPISQASANQRKGRCGRVSDGVCIRLYSEQDFLSRDEFT
DPEILRTNLASVILQMTAIGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIESFEEGKSR
LTPIGRQLAQLPIDPRLARMVIEGQKNGCVREMMIVTSALSIQDPRERPLEKQQASDEKH
RRFSDKDSDFIAFVNLWHYLAEQQKALSSSQFRRLCKTDYLNYLRVREWQDVYTQLRQVV
KELGLPVNSTPAEYREIHTALLSGLLSHIGQKDVEKQEFTGARNARFAIFPGSGLFKKPP
KWVMVSELVETSRLWGRTAARIDAEWVEPLAQHLIKRSYSDPHWEKAQGAVMASEKVTLY
GLPIVAERKVNYGSIDPVVSRELFIRHALVDGDWQSRHAFFQANRRLISEVEELENKSRR
RDILVDDETLFHFYEQRIGQEVVSGRHFDSWWRKASREQPDLLNFEKSMLIKDGSGNVSA
LDYPNSWHQGNLRLRVTYQFEPGANADGVTVHIPLPVLNQVQEEGFDWQIPGLRRDLVIA
LIKSLPKPIRRNFVPAPNYAEAFLARTAPLENSLLDSLERELRLMTGVTVSREEWQWDQV
PDHLKVTFRVVDDKNKLLAEGKVLDELKQKLKAKVQQTLSTVADDGIEQSGLHLWSFGTL
PERFEQKRGGYSVKAYPALTDEKDSVGIRLFETEEQQQSAMWLGTRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPFGKVLDLIDDCIDCGIDRLIAQYGGPVWNEEGFEALKEQVRAEL
NDSVVEIAKQVEQILTTAHSINKRLKGRVDVSLALALSDIKSQMSGLIYRGFVSHSGWKR
LPDILRYLQAIERRMEKLSLDPHRDRAQMLRVESVQQQYQALLNKIPGHRAPPAEVAEIR
WMIEELRVSYFAQQLGTPYPVSDKRIAQAIEQVTM
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatccccctttgccgccttatctgagcggctttccactctgatgctggttgacagg
caacgtctacagagacgactagacggtgcgcgccgcattcgtcagtctgagaagctgacc
gccgcgtttgcagaaattgaacgcgatatcgaacgctgtcagcagcgggttcttctgcgt
cagtcagcaaagccggttattatctatccgccttcacttccggttagtgaaaagcgagag
acgttgctggacgctattcgcgatcatcaagtggtgattattgcgggcgaaacgggctca
ggtaaaacgacgcagatccctaaactctgtctggagctgggaagagggattaagggaact
atcggacacacgcagccgagaagactggcagcgagaacggtagcaagccgcatcgcggaa
gagttaaatacaccgctgggcgaagcggtaggctacaaggtgcgctttaacgaccgcatc
ggcgacaatacgctcgtcaagctgatgactgacggcattttgctggcggaaattcagcag
gatcgcctgctgatgcagtacgacacgattattattgatgaagcgcacgagcgcagcctg
aacatcgactttattctcggctacctgcgccagctgctgccaaagcgcccggatcttaaa
gttattattacgtcggcgaccattgatcctcagcgtttctctcgtcactttcatcaggcg
ccgattgtcgaggtgtcgggaagaacttatcccgttgaagtgcgctatcgcccgattgtc
gaaggcagcgaagacggtgaccgcgaccagcagcagggcattctggacgcagttgatgag
ctgatgcatgaagcgccgggagatattctggtgtttatgagcggtgaacgggagatacgg
gataccgcagaggcgctaaatcgacaaaatctgccccatacagaggttttaccgctttac
gctagactatctaacgctgaacagaaccgagtgtttcaatcacacaccgggcggcgtatt
gtgctggcgaccaacgtggccgaaacgtcattgaccgtgccgggcattaagtacgttatc
gaccctggaaccgcgcgcatcagtcgctatagcgtaagaaccaaggtgcagcggctgccc
atcgaaccgatttcccaagcttccgccaatcagcgaaaagggcgctgcggtcgcgtatcg
gacggcgtctgtattcggctctattccgagcaggactttttgtcccgcgatgagttcacc
gatccggaaattctgcgcactaatctggcgtcagttattctgcaaatgaccgctatcgga
cttggtgacattgccgcgtttccgtttgtcgaagcgccagacaaacgcaatattcaagac
ggcgttcgcctgttggaagagcttggcgccattgagtcttttgaggagggtaaaagccgt
ttgacgcctattggtcgccagctggctcaattgcctatcgatccgcgtctggcgcgaatg
gtgattgaagggcaaaagaacggctgcgtgcgcgagatgatgatcgttacttccgcgctg
tcgattcaagatccccgagagcggccgctcgaaaagcagcaggcgtctgatgagaagcac
cgccgattcagcgataaagactctgactttatcgcctttgttaatctgtggcactacctt
gcagagcagcaaaaggcgctttcatcgtctcagtttcgcaggctgtgtaaaacagactac
ttaaactacctgcgtgtgagagagtggcaggatgtttatactcagctgcgtcaggtggtg
aaagagctgggtttaccggtaaacagtacaccggctgaatatcgggagattcataccgcg
ctgctgtctggcctgctgtcgcacattggtcaaaaggacgtagaaaagcaggagtttacc
ggcgctcgcaacgctcgatttgccatttttccaggctcagggctgtttaaaaaaccgccc
aagtgggtcatggtttctgaactggtggaaaccagccggctttgggggagaacagcggcg
cgtattgacgctgaatgggtcgaacccctagcccagcatttgattaagcgttcctatagc
gatcctcactgggaaaaggctcagggcgcggtgatggccagtgaaaaggttacgctatac
ggcctaccgattgtcgccgagcgtaaggttaactacggcagtatcgatccggtcgtcagc
cgagaactgtttattcggcacgcgctggtagacggcgactggcagagccgacacgcgttc
tttcaggcaaaccgcaggctgatctctgaggttgaagagttagagaacaagtctcgtcgc
agagacattctggttgatgatgagacgctgtttcacttttatgagcagcgtatcggccaa
gaggtggtttcaggccgccactttgacagctggtggcgcaaggcgtctcgcgagcagccg
gatttactgaattttgaaaagtcgatgctgatcaaggacggttctggcaacgtcagtgcc
ctcgattaccctaatagctggcatcagggcaatttgcgcctgcgggtgacttatcagttt
gaacccggtgccaatgcagacggcgtaaccgttcatattccattgccggttctgaatcag
gttcaggaagagggctttgactggcaaatccctggcttacggcgagacctggtgattgca
ctgattaagtcattgcctaagcccattaggcgaaactttgtacctgcacctaactatgca
gaagcctttctggctcgaacagcgccactggagaacagcctgctggactctctggagcgg
gaacttcgcctgatgacaggggtgacggtgtcacgtgaagagtggcagtgggatcaggta
cccgatcatctaaaagtcacttttcgcgttgttgatgacaaaaataagcttcttgccgaa
ggtaaagtgctggatgagttaaagcagaagcttaaggctaaagtacagcagacgctttcc
actgttgctgacgatggcatcgagcaaagcggcctgcatctttggtctttcggaacgctg
ccggagcgctttgagcaaaaacggggcggctattcggtcaaagcctatcccgcgctgacg
gacgagaaagacagcgttggcattcgcctgtttgaaacagaagagcagcagcagtcagca
atgtggttgggtacgcggcgtctgttactgctaaatattccttcaccgattaagtatctg
catgaaaagctgccgaataaggctaagctggggctttactttaacccgtttggtaaagtg
ctggatctgattgatgactgtattgactgtggtatagacaggcttattgctcagtacggt
ggcccggtatggaatgaagagggtttcgaagcgcttaaagagcaggttcgcgctgagcta
aacgacagcgttgtggaaatcgccaagcaggttgagcaaatcctgacgacggctcacagc
attaataaacgcctgaaagggcgcgttgacgtgtcgcttgcgctggctctgtcggacatc
aagtcacagatgagcgggctgatttatcgaggatttgtcagccatagcggctggaagcgc
ctgcctgatattttgcgctatctgcaagcgattgaacgccgtatggagaagctgtcactc
gatccgcacagggacagggcgcagatgcttcgggtagaaagcgttcagcagcagtatcag
gcgctgttgaacaagatccccggccatagggcgccaccggctgaggttgccgaaatccgc
tggatgattgaagagctgagagtaagctattttgctcaacagttgggcaccccgtatccc
gtatctgacaagcgaatagcgcaggctattgaacaggtgacaatgtaa
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