Leminorella richardii: NCTC12151_02393
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Entry
NCTC12151_02393 CDS
T05503
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
lri
Leminorella richardii
Pathway
lri03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NCTC12151_02393 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lri03000
]
NCTC12151_02393 (alkA)
03400 DNA repair and recombination proteins [BR:
lri03400
]
NCTC12151_02393 (alkA)
Enzymes [BR:
lri01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
NCTC12151_02393 (alkA)
Transcription factors [BR:
lri03000
]
Prokaryotic type
Helix-turn-helix
AraC family
NCTC12151_02393 (alkA)
DNA repair and recombination proteins [BR:
lri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NCTC12151_02393 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
AlkA_N
Motif
Other DBs
NCBI-ProteinID:
SQI41874
UniProt:
A0A2X4XZ41
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All DBs
Position
1:2524962..2526440
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AA seq
492 aa
AA seq
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MKPTRLRWSNEFMYQAILRHDRDYNGKFLTCVLSTGIYCLPSCPARKPLLKNIRFLATEQ
EAVEAGFRICKRCRPDLFYRGEDTEVSLFNATLERLRASPVQVKSVASLAKLCGVSTTKL
NELVRRHAHLSPADLIVKVRLQAASHALLNTSNSVLDVGLSAGFASEASFHRQFSAHMSM
TPGAYRTLRQADSFTIKLPENYSPEGIWRYHLRDKSGLAERFENGVFTRALWLGDRPVVI
EVQLDNRQAYCQWTIKQEDKAASISPGVDIYRQVIRLLGLHTDTQGLYAAAQQNPTLKRL
TDSTPVLYVPLTATPFEALTWAIIGQQINLTFAAALRHALIELAGAESNIPGLWAHPRPE
DIAALTPEDLTGIRFSRAKANYLIGAAKAIVDGSLDLDALANGSAVAAEQALCRLKGVGP
WTARYTLIRGLGFADSAPIGDSGLATALEHFYSLESRPNAAQSEQLMLAFTPFRTQATTH
LWETLRKPHATE
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgacacggctacgctggagtaacgaattcatgtatcaggccatcctgaggcac
gaccgtgactacaacggaaaatttctcacctgcgtgctgtcgaccggcatctactgcctg
ccctcttgcccagcgagaaagccactgttaaaaaacattcgctttctcgccacagagcaa
gaggccgtagaggcgggctttcgcatctgtaaacgctgccgccccgatctgttctatcgc
ggggaagatacagaagttagcctgtttaacgccactcttgaacgtcttcgtgcctcgcca
gtgcaggtaaaaagcgtcgcttccctcgccaaactgtgcggcgtcagcactaccaagctt
aacgagctggttcgccgccacgcccacctatcccctgccgatctgatcgtcaaagtgcgc
ctacaggctgcaagccacgctctgttaaatacctcaaacagcgtgctcgatgtagggcta
agcgcgggctttgccagtgaggccagctttcatcggcagttttccgcccatatgtccatg
acgcccggcgcctaccgcacgctgcgtcaggcggacagctttacaataaaattaccggaa
aactactctccagagggcatctggcgctatcacctgcgagataaaagcggcctagccgag
cgcttcgaaaacggcgtatttacccgcgccctgtggctgggggatcgcccagtcgtcata
gaagtgcagttggacaacagacaggcttattgtcagtggaccataaaacaagaagacaaa
gcagcgtctatcagccccggtgtagatatttaccgtcaggttattagactattgggtctt
catactgacactcagggactttatgccgcagcccagcagaacccaacgttaaagcgactc
actgactcaacgccagttctgtacgtaccgctgacggcaacgccgtttgaagcactgaca
tgggccatcattgggcaacagataaacctgacctttgcagctgcactgcgtcacgccctg
atcgaacttgctggagctgagagtaatattccggggctttgggctcacccacgcccagaa
gacatcgcagcccttactcccgaagacctgaccggtatccgcttctctcgcgccaaagct
aactacctgatcggcgccgcaaaggccatcgttgacggctcgctcgatcttgatgcgcta
gcgaacggttcagcagttgccgcagaacaggcgctctgccgcttgaaaggcgtcggccct
tggacagcccgctatacgctcatccgcgggctgggctttgccgacagcgcccccattggc
gatagcggcttagcgactgcgctggaacacttttattcactagaatctcgtcctaatgcc
gcgcagtcagagcagttgatgcttgcctttacgccatttagaacccaggcaaccacccac
ctgtgggaaacactgaggaaacctcatgcaacagagtaa
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