Leminorella richardii: NCTC12151_03015
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Entry
NCTC12151_03015 CDS
T05503
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lri
Leminorella richardii
Pathway
lri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12151_03015 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lri03019
]
NCTC12151_03015 (deaD)
03009 Ribosome biogenesis [BR:
lri03009
]
NCTC12151_03015 (deaD)
Enzymes [BR:
lri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12151_03015 (deaD)
Messenger RNA biogenesis [BR:
lri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12151_03015 (deaD)
Ribosome biogenesis [BR:
lri03009
]
Prokaryotic type
rRNA helicases
NCTC12151_03015 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
SQI43388
UniProt:
A0A2X4V5A7
LinkDB
All DBs
Position
1:complement(3190745..3192634)
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AA seq
629 aa
AA seq
DB search
MSEIETSFSDLGLSEPLLKALADLGFEKPSPIQSACIPHMLEGRDVLGMAQTGSGKTAAF
SLPFLNNIDPKMACPQVLVLAPTRELAVQVAEACTDYAKYLSGVRVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSQLKGLVLDEADEMLRMGFIEDVETIMAQIPAE
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSNVVTRPDISQSYWTVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQTLREQTLDRLKNGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERIMKITIPEVDLPANELLSKRRLEKFSARVNQQLESSDLDQYRALLSKLQPVEDQDIET
LAAALLKMAQGERPLILPPEAPVERRPRREFRDRDERSRDDRNSDRFGRRERDRDGAAPK
RERRDVGEMDMYRVEVGRDDGIEVRHLVGAIANEGDISSRYIGNIKLYATHSTIELPKGM
PTELLQHFTKTRVLNKPLNMQFVGPSTGGGESRRPAGRREGGFSDRRSSGGDRPSNGDRR
SFGGGRDKKASDRDGVSRPPRRRSHSDSE
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagattgaaacctctttttctgatttaggcttatcagaacctttattaaaagcg
ctagcagatctgggatttgaaaaaccatcccctatccagagcgcctgtattcctcacatg
ctggaaggtcgcgacgtgctcggcatggcgcagaccggcagcggcaaaacagcagccttt
tcgctgccgtttttaaacaatatcgatccgaaaatggcctgcccgcaggtgctggtatta
gcgccaactcgcgagctggcggttcaggttgctgaagcctgtactgactatgccaaatac
ctgtccggcgtgcgcgtggtcgctctttacggcggtcaacgttatgacgttcaactgcgc
gctctgcgtcaggggccacagattgtggtcggtacaccgggtcgactgctggatcacctc
aagcgcggtacgctggatctgtctcaactgaagggactggttctggacgaagccgacgaa
atgctgcgcatgggctttattgaagacgttgaaaccatcatggcgcagatcccggctgag
catcagaccgcgctgttctctgccaccatgccggaagctatccgtcgtattacgcgtcgc
tttatgaaagatccgcaagaggtccgcattcagtctaacgtggtcactcgtccggacatc
agccagagctactggacggtgtacggcatgcgtaaaaacgaagcgctggttcgcttcctt
gaagcagaagactttgacgccgctatcatcttcgtgcgcaccaaaaatgcgacgctggaa
gtagctgaggcgctggagcgcagcggctataacagcgcggcgctgaacggcgacatgaac
cagacactgcgcgagcagacgctggatcgcctgaagaacggccgtttggatatcctgatc
gccaccgacgtagccgctcgcggcctagacgttgagcgtatcagcctggtggttaactac
gatattccgatggactccgagtcctacgttcaccgtatcggccgtactggccgtgccggc
cgcgctggtcgcgcgctgctgtttgtggaaaaccgcgaacgccgcctgctgcgcaacatt
gaacgtatcatgaagattactatccctgaggtggatctgcccgctaacgaacttctgagc
aagcgtcgtctggagaagttctctgcgcgcgtaaaccagcagttggaaagtagcgatctg
gatcagtatcgggcgctgctgtctaagctacagccagtggaagatcaggatattgagacg
ctggccgctgcgctgctgaaaatggcacagggcgaacgtcctcttattctgccgccggaa
gcgccggttgaacgccgtccgcgtcgcgaattccgcgatcgcgatgagcgtagccgcgac
gaccgtaacagcgatcgctttggccgccgtgagcgcgaccgtgacggcgcagcgcccaag
cgtgagcgtcgcgacgttggcgaaatggacatgtaccgtgtagaagtgggtcgtgacgac
ggcattgaggttcgccatttggtgggtgccattgctaacgaaggcgatatcagcagccgc
tacatcggcaacatcaagctgtacgcgacgcactcaacgattgaactgccaaaagggatg
ccgaccgagctgctccagcacttcaccaaaacccgcgtgttgaacaagccgttgaacatg
cagtttgtggggccgtctaccggagggggagaatctcgccgtccggcaggcagacgtgaa
ggtggctttagcgatcgtcgttcttctggtggcgatcgtccttcaaacggcgatcgtcgc
tcttttggcggtggccgcgataagaaagcttcggatcgcgacggcgtttcacgcccaccg
cgtcgccgctctcactctgacagtgaataa
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