Leminorella richardii: NCTC12151_03106
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Entry
NCTC12151_03106 CDS
T05503
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lri
Leminorella richardii
Pathway
lri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12151_03106 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lri03019
]
NCTC12151_03106 (rnr)
03016 Transfer RNA biogenesis [BR:
lri03016
]
NCTC12151_03106 (rnr)
Enzymes [BR:
lri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC12151_03106 (rnr)
Messenger RNA biogenesis [BR:
lri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12151_03106 (rnr)
Transfer RNA biogenesis [BR:
lri03016
]
Prokaryotic type
tRNA degradation factors
NCTC12151_03106 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
RNA_pol_Rbc25
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
SQI43510
UniProt:
A0A2X4VE03
LinkDB
All DBs
Position
1:complement(3291352..3293775)
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AA seq
807 aa
AA seq
DB search
MNKDPFLAREMEKYDDPIPSREYILDLLSKRQTPASRDELVEALELKSEDQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDMVKGKVIGHRDGYGFLRVEGNKDDLYLSAEQMKMAMH
GDVILAQPMDLDRRGRREARVVRVLEPRSPQIVGRYFTDAGVGFVVPDDSRLNFDILIPP
ESIMGARMGYVVVVELTQRPTRRTKAIGKIVEVLGDKMGTSMAVDIALRTHEIPYVWPES
VLNEINGLKESVPEKAKKGRVDLRDLPLVTIDGEDARDFDDAVCCEKNRGGGWRLWVAIA
DVSYYVRPGTSLDAEARSRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
KAGRLSSFKFYEAVMSSHARLTYTKVAHLLDGDKELREHYAPLVPMLEELHRLYRTLDSA
REQRGGISFETEEPKFIFNAERRIESIEPLVRNDAHKIIEECMILANISAARFVEKAEEP
ALFRIHDRPKGDNLTSLRSVLGELGLTLGGGLEPAPKDYAKLMDAVADRPDREMLQTMLL
RSMKQAVYDPENRGHFGLALDAYAHFTSPIRRYPDLSLHRAIKYLLAGSKEGMTSSGGWH
YAMEDMLQLGEHCSMTERRADEATRDVADWLKCDFMQDHVGEVFKGTVSSVTSFGFFVRL
DELYIDGLVHVSTLENDYYRFDNVGQRLIGESSGQTFRLGDKVEIRVEAVHMDERKIDFA
LVSSERRPRGEGKTEKEKAKKSSRRGKSEGYAADSSVRVKPPRKPKVKNDEAGSGKAPKG
KAKKPSAKTKKITAAIKSKRAKKAAER
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagatcctttcctggcacgcgagatggaaaagtacgatgacccgatcccaagc
cgtgaatatattctcgatctgctgtccaagcggcagactcccgccagccgcgacgagctg
gtcgaggcgctggagctgaaaagcgaagaccaacaggaagcgctgcgccgccgcctgcgg
gcgatggagcgtgatgggcagctggtgtttacaagacgccagtgctatgcgctgccagag
cggctggacatggtaaaaggcaaggtgatcggccaccgcgacggctatggttttcttcgc
gtagagggcaataaggacgacctttacctgtctgctgagcagatgaaaatggctatgcac
ggcgacgttattctggcgcagccgatggatctcgatcgccgtgggcgccgcgaagcgcgc
gtcgtgcgggtgctagaaccgcgcagcccgcagattgttggccgctactttaccgacgcg
ggcgtagggtttgtggtgcctgacgatagccgcctgaattttgacattctgatcccaccg
gaaagcatcatgggcgccagaatgggttacgtggtggtggtagagctgactcagcgcccc
acgcgcaggacgaaggctatcggcaaaattgttgaggtgctcggcgacaagatgggcacc
tccatggccgtggatattgcgctgagaacccatgagatcccttacgtctggccggagtcc
gtgctgaatgaaatcaacggcctgaaagaaagcgtgccggagaaggcgaaaaaagggcgc
gttgacctgcgcgacctgccgctggtgacgattgacggcgaagacgcccgcgactttgac
gacgcggtgtgctgcgagaagaaccgcggcggcggctggcgcctgtgggttgccattgcc
gacgtcagctactacgttcgtcccggcacttctctggatgccgaagcgcgcagccgaggc
aactcggtttacttcccgtcgcaggttatcccgatgctgccggaagtgctgtccaacggc
ctgtgttcgctgaacccgcaggtagaccgcctgtgtatggtgtgcgagatgactatctcc
aaggccggtcgcctgagttcgttcaagttttatgaagcggtgatgagctctcacgctcgc
ctcacctacaccaaggttgctcacctgctcgacggtgataaagagctgcgcgagcactac
gcgccgctggtaccgatgctggaagagctgcacaggctctaccgcacgctggacagcgcc
cgcgagcagcggggcggcatctcgtttgaaacggaagagccgaagtttatttttaacgcc
gagcgccgcattgagagcatcgaaccgctggtgcgtaacgacgcccacaagatcattgaa
gagtgcatgattctggcgaacatctctgctgcgcgctttgtggaaaaagcagaagagcct
gcgctgttccgcattcacgaccgcccgaaaggggacaacctgacatcgcttcgtagcgtg
ctgggcgagcttggtctgacgcttggcggtggccttgagccagcgcctaaggactacgct
aagctgatggatgcggttgccgatcgccccgatcgcgaaatgctgcaaaccatgctgctg
cgctcaatgaagcaggcagtatacgatccggaaaaccgcggtcactttggcctcgcgctg
gacgcctacgcgcactttacgtcaccgattcgacgctaccccgatctgtcgctgcaccgc
gctatcaagtacctgctggcaggaagcaaggagggaatgacctccagcggcggatggcac
tatgccatggaagacatgctccagctcggagagcactgctccatgaccgagcgccgcgcc
gatgaggccactcgcgacgtagcggactggctgaagtgcgactttatgcaggatcacgtg
ggtgaagtgttcaagggaaccgtgtcgagcgtaacgtcctttggcttcttcgtccggctt
gacgagctgtatattgacggcctagtgcacgtctcaacgctggagaacgactactatcgg
tttgataacgtcggtcagcggctgattggcgagtcttccggccagaccttccgcctaggt
gacaaggttgagatccgcgttgaagccgttcatatggacgagcgtaagatcgactttgcg
ctggtttccagcgagcgccgcccgcgcggtgaaggcaagaccgagaaagagaaggcgaag
aagtcctctcggcgcggcaagtctgaaggctatgcggcagattcctccgtgcgggtaaag
ccgccgagaaagcccaaggtaaaaaatgacgaagcgggttcgggcaaagcgccgaaaggg
aaagccaagaaaccgtcagccaaaacgaagaagattaccgcggcgataaaaagcaagcgg
gcaaagaaagccgctgaacgctag
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