Lethenteron reissneri (Far Eastern brook lamprey): 133340293
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Entry
133340293 CDS
T09663
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133340293 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrj03041
]
133340293 (SNRNP200)
Enzymes [BR:
lrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133340293 (SNRNP200)
Spliceosome [BR:
lrj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
133340293 (SNRNP200)
Complex C
U5 SnRNP specific factors
133340293 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
DEXQc_Suv3
AAA_30
HTH_61
Sigma54_activ_2
DUF603
Motif
Other DBs
NCBI-GeneID:
133340293
NCBI-ProteinID:
XP_061404387
LinkDB
All DBs
Position
2:complement(978550..1029523)
Genome browser
AA seq
2140 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEATGEVLSLVGKLTGSRMGDRAMRSK
PVLLEERRAKRRKRDEDRHDMKKMRGYTLLSDGIDEMVGIVYKPRTKETRDTYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKSEKLRDKERRRDIEGLLGTLEDSRYHVLVNLGKKIS
DYGGETHTQNMDDNIDETYGVNVQFESDEEGGDEDVYGEVREEASDEDSEGVEAAEEATL
SANLGGAEDMLSAKKKELHPRQVDAFWLQRQLSAFYDDAITSQRKADEVLHILKTASDDR
ECENQLVLLLGFNTFDFIRTLRQHRMMVLYCTLLASAQSEQQKEEIIGKMESDSELSAIL
AALHETDKADLVREERTRRERQRQSRLDTGLGTTEMEHDSETQTPRQSLDLESLTFAQGS
HFMANKRCQLPDGSFRKQRRGCEEVHVPALKPKPFGPDEQLLPVEKLPKYAQAAFEGIKT
LNRIQSKLHRAALESDQNLLLCAPTGAGKTNVALLCMLREIGKHINMDGTINTDDFKIIY
IAPMRSLVQEIVGSFSKRLSSYGLKVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKG
GERPYTQLVRLVIIDEIHLLHDERGPVLEALVARTIRSVEMTQEDARLVGLSATLPNYED
VAAFLRVDPAKGLFFFDNSFRPVPLEQQYVGVTEKKAMKRFQIMNEIVYEKVLEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGNFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMSRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVVIKGTQVYSPEKGR
WTELGALDVLQMLGRAGRPQYDTKGEGILITSHSELQYYLSLLNQQLPIESQLVSKLPDM
LNAEVVLGNVQNTKDAVNWLSYTYLYVRMLRSPALYGVSADALRSDPALEARRLDLVHTA
ALVLDKTNLVKYDKKTGHLQATDLGRIASHYYCTHESMATYNQLLKPTLSEIELFRVFSL
SSEFRHINVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMAD
MVYVTQSAGRLMRCLFEMVLHRGWAQLTDKVLSLCKMIDKRMWQSMSPLRQFRKIPEEVV
KKIEKKNFPWERFYDLNHNEIGELIRMPKMGKTIHKYVHQFPRLELSTHIQPITRSTLRV
ELTITPDFQWDDKVHGQSEAFWILVEDVDSEVVLHHEYFLLKAKFCEDEHLVSFFVPVFE
PLPPQYFIRVLSDRWIMSETQLAVSFRHLLLPEKYPPPTELLDLQPLPVSALRSPQYERL
YQSAFPFFNPIQTQVFNAVYNSDDNVFIGAPAGSGKTICAEFAILRLFMHNPEGRCVYVT
PLEALAQQVYSEWVDRFQGALGRRVVLLTGETAADLKLLARGQVIVSTPEHWDVLSRRWK
QRKGVQGINLFIVDETHLIGAHNGPVLEVICSRMRYISSQIERPIRVVALSASLSNAKDV
AQWLGCSATGTFNFHPNVRPVPLELHIQGFNISHTQTRLMAMGRPAYHAILKHSPHKPAL
VFVPSRKQTRLTAIDILTYCAAEIQPHRFLHCAEEDLAPFLEQLSDSTLRETLANGVGYL
HEGLTETERRTVEQLFHSGAVQVVVASRSLCWGMKVAAHLVVVMDTQHYNGKIHAYVDYP
IFDVLQMVGRANRPLVDDDGKCVILCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEV
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVESTLGDLEHSK
CISLEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIDIVSNASEYAAIPI
RHHEDVLLRQLAQKVPNKLTNPKFNDPHAKANLLLQAHLSRMQLNAELQSDTEDILTQAI
RLIQACVDVLSSNGWLSPALAAMELAQMCTQAMWSKDSYLKQLPHFTADHVKRCTEQGVE
SVFDVLEMEDAARSALLQLDDSKMADVARFCNRYPNIELSYELSDKENVHSGSAVVVMVQ
LEREDEVTGPVIAPFFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAPG
THHYTLYFMSDAYMGCDQEYRFSVEVQEAVESDRGASDSE
NT seq
6423 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgactgcccgcagtctccagtatgagtacaaagcgaactcgaacctggtg
ctgcaagccgaccgctcgctgatcgaccgcacacggcgcgacgaggccaccggggaggtg
ctctccctcgtgggcaagctcaccggctcccgcatgggcgaccgtgccatgcgctccaag
cccgtgctgctcgaggaacgcagagccaagcgacgtaagcgtgacgaggaccggcatgac
atgaagaagatgcggggctacacgctgctgtcggatggcatcgacgagatggtgggcatc
gtgtataaaccgcgcaccaaggagacgcgcgacacctatgaggtgctgctcagcttcatc
caggcggcgctcggggaccagccgcgtgacatcctgtgcggcgctgccgacgaggtgctc
gccgtgctgaagagcgagaagctgcgcgacaaggagcggcggcgcgacattgagggcctg
ctggggaccctggaggactcgcgctaccacgtcctcgtcaacctgggcaaaaagatctcc
gactacggcggggagacgcacacacagaacatggacgacaacattgacgagacgtacgga
gtcaacgtgcagtttgaatcggatgaggagggtggcgacgaggacgtatatggggaggtg
cgtgaggaggcctctgatgaggacagcgagggagtggaggcggctgaggaggcgacgctg
tcggccaatctcggcggagcggaagacatgctctcggccaagaagaaggagctgcaccca
cgccaggtggacgccttttggctgcagcggcagctgtcggccttctacgacgacgccata
acctcgcagcgcaaggccgatgaggtcctccacatcctcaagacggcgagtgacgaccgc
gagtgtgagaatcagctggttctactgctcgggttcaacaccttcgacttcatccgcacg
ctgaggcagcaccgcatgatggtgctgtactgcacgctgctggcgagtgctcagagcgag
cagcagaaggaggagatcatcgggaagatggagtctgactcagagctgagtgctatcctg
gccgcgctgcacgagacggacaaggccgacctcgtgcgcgaggagcggacgcgccgggag
agacagaggcagtcacgtctggacacagggctgggcacgacggagatggagcacgactcg
gagacccagacgccgcgccagtcgctcgacctggagtcgctcaccttcgcccagggcagc
cacttcatggccaacaagcgctgtcagctgcccgacggctccttccgcaagcagcggcgc
ggctgcgaggaggtgcatgtgccagcactcaagcccaagccgttcggacccgacgagcaa
ctgctgcctgtggagaagctgcccaagtatgcgcaggcggcgttcgagggcatcaagacc
ctaaaccgcatccagagcaaacttcaccgcgctgccctggagtcggaccagaacctgctg
ctgtgcgcacccacgggcgccggcaaaacgaacgtggcgctgctgtgcatgctgcgcgag
atcggcaagcacatcaacatggacggtaccattaacacggacgacttcaagatcatctac
atcgcgcctatgcgctcgctcgtgcaagaaatcgtcggcagcttctccaagcgcctgtca
agttacggactgaaggtggcggagttgaccggagatcatcagctgtgcaaggaggagatc
aacgccacgcagatcatcgtgtgcactcccgagaagtgggacatcataacccgcaagggc
ggcgagcggccctacacgcagctcgtgcgcctcgtcatcatcgatgagatccacctattg
cacgacgagcgtggccctgtgctggaggcgctggtggcgcgcacaattcgcagcgtggag
atgacgcaggaggacgcacgcctcgtcggcctcagtgccacactgcccaactatgaggac
gtggccgccttcctgcgcgtcgaccccgccaagggccttttcttcttcgacaacagtttc
cggcccgtgcctctggagcagcagtacgtgggggtgacagagaagaaggcgatgaaacgc
ttccagatcatgaacgagatcgtgtacgagaaggtgctggagcacgcgggcaagaaccag
gtgctggtgtttgtccactcgcgcaaggagacagggaagacggcgcgcgccatccgggat
atgtgcctggagaaggacacgttgggcaacttcctgcgcgaggggtcggcctccacggag
gtcctgcgcacagaggccgagcagtgcaagaatctggagttgaaggacctgctgccctac
gggtttgcgatccaccacgccggcatgtcccgcgtcgaccgcacactcgtggaggacctc
ttcgctgacaagcacatccaggtgctggtgtcgacggcgacgctggcgtggggagtaaac
ctgccggcgcacacggtggtcatcaagggcacccaggtgtacagccctgagaagggccgc
tggaccgagctgggagccctcgacgtgctgcagatgctgggccgtgcggggcgtccccag
tacgacaccaagggtgaggggatcctcatcacatcgcactcggagctgcagtactacctg
tcgctgctcaaccagcagctgcccatcgagagccagctcgtgtccaagctgcctgacatg
ctcaacgccgaggtggtgctgggcaacgtgcagaacaccaaggatgcggtgaactggctg
agctacacgtatctatacgtgcgcatgctgcgctcgcctgcgctgtacggcgtgagcgcc
gatgcgctgcgctcggaccccgcactggaggcgcggcgtctcgacctcgtgcacacagca
gcgctcgtgctagacaagaccaacctggtgaagtacgacaagaagacgggccacctgcag
gccacggatctgggccgcatcgcctcacactactactgcacgcacgagagcatggccacc
tacaaccagttgctgaagcccacgctgagcgagatcgagctcttccgtgtcttttccctc
tcctccgagttccgacacatcaacgtgcgcgaggaggagaagctggagttgcagaagctc
ctggagagagttcccatcccagtgaaagagagcatcgaggagcccagcgccaagataaat
gtgctgctgcaggcatacatctcgcagctgaagctggagggatttgccctgatggcagac
atggtgtacgtcacacagtctgcaggaagactgatgcgctgcctgtttgagatggttctg
caccgcggctgggcccagctcacggacaaagtgctcagcctctgcaagatgattgacaaa
cgcatgtggcagtcgatgagccccctgcgccagttcaggaaaatcccggaggaagtcgtc
aagaagatcgagaagaagaacttcccctgggagcgcttctacgacctcaatcacaacgag
atcggtgagttgatccgcatgcccaagatggggaagacgatccacaagtacgtccaccag
ttcccgcggctggagttgtccacccacatccagcccatcacccgctccacgctgcgagtg
gagctcaccatcacgccggacttccagtgggacgacaaggtgcacgggcagagcgaggcg
ttttggatcctcgtggaggacgtggactcggaggtggtgctgcaccacgagtacttcctg
ctgaaggccaagttctgcgaggacgagcacctcgtctccttctttgtgcccgtttttgag
ccgctgccaccacagtacttcatccgcgtgctgtcagaccgatggatcatgtcggagacg
cagctggccgtctcgttccggcacctgctgctcccagagaaataccctccccccaccgag
ctgctggatctgcagccattgcccgtgtctgcgctgcgcagcccccagtatgagcgcctc
taccagagcgcgttccccttcttcaaccccatccagacacaggtgttcaacgccgtgtac
aacagcgacgacaatgtcttcatcggtgcgccggctggcagcggcaaaacaatctgtgcg
gaattcgccatcctgcggctgttcatgcacaacccggaggggcgctgcgtgtacgtcacc
ccactggaggcgctggcgcagcaggtgtacagcgagtgggtcgaccgtttccaaggagca
ttggggcgccgcgtcgttctgctcacaggcgagacggctgcggacctaaagctgctggcg
cggggccaggtgatcgtaagcacgcctgagcactgggacgtgctctcccggcgctggaag
cagcgcaagggcgtgcaggggatcaacctcttcatcgtcgacgagacgcacctcatcggc
gctcacaacgggcccgtgctggaggtgatctgctcgcggatgcgctacatctcgtcccag
atcgagcgtccgatccgcgtggtggcgctcagtgcgtcgctctccaacgccaaggacgtg
gcccagtggctcggctgctcggccaccggcaccttcaacttccacccaaatgtccgcccc
gtgcccctcgagctccacatccagggcttcaatatcagccacacgcagacgcgactgatg
gcgatggggcggcccgcgtaccatgccatcctcaagcactccccgcacaaacccgcgctc
gtattcgtgccctcacgcaagcagacgcgcctcaccgccatcgacatcctcacctactgc
gccgccgagatccagccgcaccgcttcctgcactgtgccgaggaggacctggccccattc
ctggagcaattgtcggatagcacgctgcgcgagacgcttgccaacggcgtcggctacctg
cacgaggggctcacggagacggagcggcgcaccgtggagcagctcttccactcgggggcg
gtgcaggtggtggtggcgtcgcgctcgctctgctgggggatgaaggtggcggcgcacctc
gtggtcgtcatggatacgcagcactacaacggcaagatccatgcctacgtggactaccca
atattcgacgtgctgcagatggtcggccgtgccaaccgccccctcgtcgacgacgacggc
aaatgcgtcatcctgtgccagggctccaagaaggacttcttcaagaaattcctctacgag
cctctgcccgtggagtcgcacctggaccactgcctccacgaccacttcaacgccgaggtg
gtgaccaagacaatcgagaacaagcaggatgctgtggactacctcacctggacattcctg
taccgccgcatgacccagaaccccaactactacaacctgcagggtgtatcccaccggcac
ctgtcggaccacctgtcggagctggtggagagcaccctgggtgacctggagcacagcaag
tgcatcagcctggaggacgagatggacgtagcgccgctcaacctgggcatgatcgcagct
tactactacatcaactacaccaccatcgagctgttcagcatgtctctaaatgcgaagacg
aagatccgcggcctcatcgacatcgtctccaacgcgtctgagtacgcggccattcccatc
cgccaccacgaggacgtcctgctgcgccagctggcacagaaggtgccgaacaagctgacg
aatcccaagtttaacgacccccacgccaaggcgaatctcctgctgcaagcgcacctctca
cgcatgcagcttaacgcggagctacagtcagacaccgaggacatcctcacacaggctatc
cgcctgatccaggcatgcgtggatgtactgtcgagcaatggctggctcagcccggcgctg
gccgcgatggagctggcgcagatgtgcacgcaggccatgtggtccaaggactcgtacctc
aagcagctgccacacttcacagccgaccacgtcaagcgctgcaccgagcagggagtggag
agcgtcttcgacgtgctggagatggaggacgccgcgcgttccgcgctgctgcagctggat
gattcgaagatggccgacgtggcacgcttctgtaaccgctacccgaacatcgagctctcc
tacgagctcagcgacaaggagaacgtgcacagtggctcggccgtggtggtcatggtgcag
ctggagcgggaggacgaggtgacggggcccgtcatcgcgccattcttcccacagaagagg
gaggagggctggtgggttgtcatcggtgacccgaagagcaacagcctcatctccattaag
aggctcacgctgcagcaaaaagccaaggtgaagctggactttgtggcgccagcccccggc
acgcaccactacacgctctacttcatgagcgatgcctacatgggctgcgaccaggagtac
cggttcagcgtggaggtgcaggaagcggtggagagcgatcgcggtgccagcgactcggag
tga
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integrated database retrieval system