KEGG   Lethenteron reissneri (Far Eastern brook lamprey): 133340293
Entry
133340293         CDS       T09663                                 
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
lrj  Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lrj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133340293 (SNRNP200)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lrj03041]
    133340293 (SNRNP200)
Enzymes [BR:lrj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     133340293 (SNRNP200)
Spliceosome [BR:lrj03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    133340293 (SNRNP200)
 Complex C
   U5 SnRNP specific factors
    133340293 (SNRNP200)
SSDB
Motif
Pfam: Sec63 SNRNP200_wHTH DEAD Helicase_PWI ResIII Helicase_C BRR2_plug DEXQc_Suv3 AAA_30 HTH_61 Sigma54_activ_2 DUF603
Other DBs
NCBI-GeneID: 133340293
NCBI-ProteinID: XP_061404387
LinkDB
Position
2:complement(978550..1029523)
AA seq 2140 aa
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEATGEVLSLVGKLTGSRMGDRAMRSK
PVLLEERRAKRRKRDEDRHDMKKMRGYTLLSDGIDEMVGIVYKPRTKETRDTYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKSEKLRDKERRRDIEGLLGTLEDSRYHVLVNLGKKIS
DYGGETHTQNMDDNIDETYGVNVQFESDEEGGDEDVYGEVREEASDEDSEGVEAAEEATL
SANLGGAEDMLSAKKKELHPRQVDAFWLQRQLSAFYDDAITSQRKADEVLHILKTASDDR
ECENQLVLLLGFNTFDFIRTLRQHRMMVLYCTLLASAQSEQQKEEIIGKMESDSELSAIL
AALHETDKADLVREERTRRERQRQSRLDTGLGTTEMEHDSETQTPRQSLDLESLTFAQGS
HFMANKRCQLPDGSFRKQRRGCEEVHVPALKPKPFGPDEQLLPVEKLPKYAQAAFEGIKT
LNRIQSKLHRAALESDQNLLLCAPTGAGKTNVALLCMLREIGKHINMDGTINTDDFKIIY
IAPMRSLVQEIVGSFSKRLSSYGLKVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKG
GERPYTQLVRLVIIDEIHLLHDERGPVLEALVARTIRSVEMTQEDARLVGLSATLPNYED
VAAFLRVDPAKGLFFFDNSFRPVPLEQQYVGVTEKKAMKRFQIMNEIVYEKVLEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGNFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMSRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVVIKGTQVYSPEKGR
WTELGALDVLQMLGRAGRPQYDTKGEGILITSHSELQYYLSLLNQQLPIESQLVSKLPDM
LNAEVVLGNVQNTKDAVNWLSYTYLYVRMLRSPALYGVSADALRSDPALEARRLDLVHTA
ALVLDKTNLVKYDKKTGHLQATDLGRIASHYYCTHESMATYNQLLKPTLSEIELFRVFSL
SSEFRHINVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMAD
MVYVTQSAGRLMRCLFEMVLHRGWAQLTDKVLSLCKMIDKRMWQSMSPLRQFRKIPEEVV
KKIEKKNFPWERFYDLNHNEIGELIRMPKMGKTIHKYVHQFPRLELSTHIQPITRSTLRV
ELTITPDFQWDDKVHGQSEAFWILVEDVDSEVVLHHEYFLLKAKFCEDEHLVSFFVPVFE
PLPPQYFIRVLSDRWIMSETQLAVSFRHLLLPEKYPPPTELLDLQPLPVSALRSPQYERL
YQSAFPFFNPIQTQVFNAVYNSDDNVFIGAPAGSGKTICAEFAILRLFMHNPEGRCVYVT
PLEALAQQVYSEWVDRFQGALGRRVVLLTGETAADLKLLARGQVIVSTPEHWDVLSRRWK
QRKGVQGINLFIVDETHLIGAHNGPVLEVICSRMRYISSQIERPIRVVALSASLSNAKDV
AQWLGCSATGTFNFHPNVRPVPLELHIQGFNISHTQTRLMAMGRPAYHAILKHSPHKPAL
VFVPSRKQTRLTAIDILTYCAAEIQPHRFLHCAEEDLAPFLEQLSDSTLRETLANGVGYL
HEGLTETERRTVEQLFHSGAVQVVVASRSLCWGMKVAAHLVVVMDTQHYNGKIHAYVDYP
IFDVLQMVGRANRPLVDDDGKCVILCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEV
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVESTLGDLEHSK
CISLEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIDIVSNASEYAAIPI
RHHEDVLLRQLAQKVPNKLTNPKFNDPHAKANLLLQAHLSRMQLNAELQSDTEDILTQAI
RLIQACVDVLSSNGWLSPALAAMELAQMCTQAMWSKDSYLKQLPHFTADHVKRCTEQGVE
SVFDVLEMEDAARSALLQLDDSKMADVARFCNRYPNIELSYELSDKENVHSGSAVVVMVQ
LEREDEVTGPVIAPFFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAPG
THHYTLYFMSDAYMGCDQEYRFSVEVQEAVESDRGASDSE
NT seq 6423 nt   +upstreamnt  +downstreamnt
atggcggacgtgactgcccgcagtctccagtatgagtacaaagcgaactcgaacctggtg
ctgcaagccgaccgctcgctgatcgaccgcacacggcgcgacgaggccaccggggaggtg
ctctccctcgtgggcaagctcaccggctcccgcatgggcgaccgtgccatgcgctccaag
cccgtgctgctcgaggaacgcagagccaagcgacgtaagcgtgacgaggaccggcatgac
atgaagaagatgcggggctacacgctgctgtcggatggcatcgacgagatggtgggcatc
gtgtataaaccgcgcaccaaggagacgcgcgacacctatgaggtgctgctcagcttcatc
caggcggcgctcggggaccagccgcgtgacatcctgtgcggcgctgccgacgaggtgctc
gccgtgctgaagagcgagaagctgcgcgacaaggagcggcggcgcgacattgagggcctg
ctggggaccctggaggactcgcgctaccacgtcctcgtcaacctgggcaaaaagatctcc
gactacggcggggagacgcacacacagaacatggacgacaacattgacgagacgtacgga
gtcaacgtgcagtttgaatcggatgaggagggtggcgacgaggacgtatatggggaggtg
cgtgaggaggcctctgatgaggacagcgagggagtggaggcggctgaggaggcgacgctg
tcggccaatctcggcggagcggaagacatgctctcggccaagaagaaggagctgcaccca
cgccaggtggacgccttttggctgcagcggcagctgtcggccttctacgacgacgccata
acctcgcagcgcaaggccgatgaggtcctccacatcctcaagacggcgagtgacgaccgc
gagtgtgagaatcagctggttctactgctcgggttcaacaccttcgacttcatccgcacg
ctgaggcagcaccgcatgatggtgctgtactgcacgctgctggcgagtgctcagagcgag
cagcagaaggaggagatcatcgggaagatggagtctgactcagagctgagtgctatcctg
gccgcgctgcacgagacggacaaggccgacctcgtgcgcgaggagcggacgcgccgggag
agacagaggcagtcacgtctggacacagggctgggcacgacggagatggagcacgactcg
gagacccagacgccgcgccagtcgctcgacctggagtcgctcaccttcgcccagggcagc
cacttcatggccaacaagcgctgtcagctgcccgacggctccttccgcaagcagcggcgc
ggctgcgaggaggtgcatgtgccagcactcaagcccaagccgttcggacccgacgagcaa
ctgctgcctgtggagaagctgcccaagtatgcgcaggcggcgttcgagggcatcaagacc
ctaaaccgcatccagagcaaacttcaccgcgctgccctggagtcggaccagaacctgctg
ctgtgcgcacccacgggcgccggcaaaacgaacgtggcgctgctgtgcatgctgcgcgag
atcggcaagcacatcaacatggacggtaccattaacacggacgacttcaagatcatctac
atcgcgcctatgcgctcgctcgtgcaagaaatcgtcggcagcttctccaagcgcctgtca
agttacggactgaaggtggcggagttgaccggagatcatcagctgtgcaaggaggagatc
aacgccacgcagatcatcgtgtgcactcccgagaagtgggacatcataacccgcaagggc
ggcgagcggccctacacgcagctcgtgcgcctcgtcatcatcgatgagatccacctattg
cacgacgagcgtggccctgtgctggaggcgctggtggcgcgcacaattcgcagcgtggag
atgacgcaggaggacgcacgcctcgtcggcctcagtgccacactgcccaactatgaggac
gtggccgccttcctgcgcgtcgaccccgccaagggccttttcttcttcgacaacagtttc
cggcccgtgcctctggagcagcagtacgtgggggtgacagagaagaaggcgatgaaacgc
ttccagatcatgaacgagatcgtgtacgagaaggtgctggagcacgcgggcaagaaccag
gtgctggtgtttgtccactcgcgcaaggagacagggaagacggcgcgcgccatccgggat
atgtgcctggagaaggacacgttgggcaacttcctgcgcgaggggtcggcctccacggag
gtcctgcgcacagaggccgagcagtgcaagaatctggagttgaaggacctgctgccctac
gggtttgcgatccaccacgccggcatgtcccgcgtcgaccgcacactcgtggaggacctc
ttcgctgacaagcacatccaggtgctggtgtcgacggcgacgctggcgtggggagtaaac
ctgccggcgcacacggtggtcatcaagggcacccaggtgtacagccctgagaagggccgc
tggaccgagctgggagccctcgacgtgctgcagatgctgggccgtgcggggcgtccccag
tacgacaccaagggtgaggggatcctcatcacatcgcactcggagctgcagtactacctg
tcgctgctcaaccagcagctgcccatcgagagccagctcgtgtccaagctgcctgacatg
ctcaacgccgaggtggtgctgggcaacgtgcagaacaccaaggatgcggtgaactggctg
agctacacgtatctatacgtgcgcatgctgcgctcgcctgcgctgtacggcgtgagcgcc
gatgcgctgcgctcggaccccgcactggaggcgcggcgtctcgacctcgtgcacacagca
gcgctcgtgctagacaagaccaacctggtgaagtacgacaagaagacgggccacctgcag
gccacggatctgggccgcatcgcctcacactactactgcacgcacgagagcatggccacc
tacaaccagttgctgaagcccacgctgagcgagatcgagctcttccgtgtcttttccctc
tcctccgagttccgacacatcaacgtgcgcgaggaggagaagctggagttgcagaagctc
ctggagagagttcccatcccagtgaaagagagcatcgaggagcccagcgccaagataaat
gtgctgctgcaggcatacatctcgcagctgaagctggagggatttgccctgatggcagac
atggtgtacgtcacacagtctgcaggaagactgatgcgctgcctgtttgagatggttctg
caccgcggctgggcccagctcacggacaaagtgctcagcctctgcaagatgattgacaaa
cgcatgtggcagtcgatgagccccctgcgccagttcaggaaaatcccggaggaagtcgtc
aagaagatcgagaagaagaacttcccctgggagcgcttctacgacctcaatcacaacgag
atcggtgagttgatccgcatgcccaagatggggaagacgatccacaagtacgtccaccag
ttcccgcggctggagttgtccacccacatccagcccatcacccgctccacgctgcgagtg
gagctcaccatcacgccggacttccagtgggacgacaaggtgcacgggcagagcgaggcg
ttttggatcctcgtggaggacgtggactcggaggtggtgctgcaccacgagtacttcctg
ctgaaggccaagttctgcgaggacgagcacctcgtctccttctttgtgcccgtttttgag
ccgctgccaccacagtacttcatccgcgtgctgtcagaccgatggatcatgtcggagacg
cagctggccgtctcgttccggcacctgctgctcccagagaaataccctccccccaccgag
ctgctggatctgcagccattgcccgtgtctgcgctgcgcagcccccagtatgagcgcctc
taccagagcgcgttccccttcttcaaccccatccagacacaggtgttcaacgccgtgtac
aacagcgacgacaatgtcttcatcggtgcgccggctggcagcggcaaaacaatctgtgcg
gaattcgccatcctgcggctgttcatgcacaacccggaggggcgctgcgtgtacgtcacc
ccactggaggcgctggcgcagcaggtgtacagcgagtgggtcgaccgtttccaaggagca
ttggggcgccgcgtcgttctgctcacaggcgagacggctgcggacctaaagctgctggcg
cggggccaggtgatcgtaagcacgcctgagcactgggacgtgctctcccggcgctggaag
cagcgcaagggcgtgcaggggatcaacctcttcatcgtcgacgagacgcacctcatcggc
gctcacaacgggcccgtgctggaggtgatctgctcgcggatgcgctacatctcgtcccag
atcgagcgtccgatccgcgtggtggcgctcagtgcgtcgctctccaacgccaaggacgtg
gcccagtggctcggctgctcggccaccggcaccttcaacttccacccaaatgtccgcccc
gtgcccctcgagctccacatccagggcttcaatatcagccacacgcagacgcgactgatg
gcgatggggcggcccgcgtaccatgccatcctcaagcactccccgcacaaacccgcgctc
gtattcgtgccctcacgcaagcagacgcgcctcaccgccatcgacatcctcacctactgc
gccgccgagatccagccgcaccgcttcctgcactgtgccgaggaggacctggccccattc
ctggagcaattgtcggatagcacgctgcgcgagacgcttgccaacggcgtcggctacctg
cacgaggggctcacggagacggagcggcgcaccgtggagcagctcttccactcgggggcg
gtgcaggtggtggtggcgtcgcgctcgctctgctgggggatgaaggtggcggcgcacctc
gtggtcgtcatggatacgcagcactacaacggcaagatccatgcctacgtggactaccca
atattcgacgtgctgcagatggtcggccgtgccaaccgccccctcgtcgacgacgacggc
aaatgcgtcatcctgtgccagggctccaagaaggacttcttcaagaaattcctctacgag
cctctgcccgtggagtcgcacctggaccactgcctccacgaccacttcaacgccgaggtg
gtgaccaagacaatcgagaacaagcaggatgctgtggactacctcacctggacattcctg
taccgccgcatgacccagaaccccaactactacaacctgcagggtgtatcccaccggcac
ctgtcggaccacctgtcggagctggtggagagcaccctgggtgacctggagcacagcaag
tgcatcagcctggaggacgagatggacgtagcgccgctcaacctgggcatgatcgcagct
tactactacatcaactacaccaccatcgagctgttcagcatgtctctaaatgcgaagacg
aagatccgcggcctcatcgacatcgtctccaacgcgtctgagtacgcggccattcccatc
cgccaccacgaggacgtcctgctgcgccagctggcacagaaggtgccgaacaagctgacg
aatcccaagtttaacgacccccacgccaaggcgaatctcctgctgcaagcgcacctctca
cgcatgcagcttaacgcggagctacagtcagacaccgaggacatcctcacacaggctatc
cgcctgatccaggcatgcgtggatgtactgtcgagcaatggctggctcagcccggcgctg
gccgcgatggagctggcgcagatgtgcacgcaggccatgtggtccaaggactcgtacctc
aagcagctgccacacttcacagccgaccacgtcaagcgctgcaccgagcagggagtggag
agcgtcttcgacgtgctggagatggaggacgccgcgcgttccgcgctgctgcagctggat
gattcgaagatggccgacgtggcacgcttctgtaaccgctacccgaacatcgagctctcc
tacgagctcagcgacaaggagaacgtgcacagtggctcggccgtggtggtcatggtgcag
ctggagcgggaggacgaggtgacggggcccgtcatcgcgccattcttcccacagaagagg
gaggagggctggtgggttgtcatcggtgacccgaagagcaacagcctcatctccattaag
aggctcacgctgcagcaaaaagccaaggtgaagctggactttgtggcgccagcccccggc
acgcaccactacacgctctacttcatgagcgatgcctacatgggctgcgaccaggagtac
cggttcagcgtggaggtgcaggaagcggtggagagcgatcgcggtgccagcgactcggag
tga

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