Lethenteron reissneri (Far Eastern brook lamprey): 133340800
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Entry
133340800 CDS
T09663
Symbol
TAF5
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133340800 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrj03021
]
133340800 (TAF5)
03036 Chromosome and associated proteins [BR:
lrj03036
]
133340800 (TAF5)
Transcription machinery [BR:
lrj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133340800 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
133340800 (TAF5)
Chromosome and associated proteins [BR:
lrj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
133340800 (TAF5)
STAGA complex
133340800 (TAF5)
TFTC complex
133340800 (TAF5)
SAGA complex
133340800 (TAF5)
SLIK complex
133340800 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
TFIID_NTD2
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_WDR19_1st
WD_LRWD1
PEP5_VPS11_N
Beta-prop_Nup120_160
VPS8_N
LisH
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
133340800
NCBI-ProteinID:
XP_061405194
LinkDB
All DBs
Position
2:14181633..14197665
Genome browser
AA seq
773 aa
AA seq
DB search
MAAPIEQQQQRGDLTENNNNNNGGGNNNNSGGGSNGSAKVAMETGDAEKEEETAAEAAEA
SRKDSGAASEGEGGGGSSGGGGVVPPAPPPPPSSSSSSVLDRKALAAVLEFLQRSGLHDS
VETLRREACVASDPGLVTPGGTASAAASKDAGAAGSSSSRATSADVSSLLSAYKQAGEAA
RYHDDYTEMKRFVESSLDCHKAELAGLLYPLFLHMYLELVYHEHEAEAKAFFTLFNGDQE
PCYQDDLRVLSGLSKRQHLLRGDTSSALLSSFRTGKFVVRMARDSYAGLRRHLQERPTSR
ASLITQEHVYVDVYDGAPRTAAQVALTSGAMGGEAPRHANKSKVYYGLLKEPELEVPPDD
EDEEGAGEGEEGRPKKKKSKKEATAGKSKKQDPNAPPITRIPLPELKDSDKLDKVIALKE
SMKRVRLGPDCLPSICLYTFLNAYQGLSCCDISDDSSLVAAGFSDSTVRVWSLTPKKLRC
IKPSSELVLIDKEADDVMERIMDDRTTSDSKLLLGHGGPVFSTSFSPERAWLLSSSEDGT
VRVWSLHTFTCLVAYRGHIWPVWHASFSPHGHYFVSAGHDRTARLWVMDHHQAVRVFAGH
LSDVTCACFHPNSNYVATGSADRSVRVWDVLNGACVRTLTGHKGSVHCVAFSPNGRFLAS
GGADSRVLLWDIAHGLPIAELKGHTDTVYTLKFSRDGEVLASGGADCCVRLWDVTRAVDE
LDPDDFVSASLHSPPAEHAADLTLGAHFTKSTPVAHLHFTRRNLLLACGAFTP
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccgatagagcagcagcagcagcgcggagacttgacggaaaacaacaacaac
aacaacggcggcggcaacaacaacaacagtggcggcggcagcaacggcagcgcgaaggtg
gcgatggagacgggagacgcggagaaggaggaggagactgcggcggaggcggccgaagcg
tccaggaaagactcgggcgccgcctccgagggcgaaggaggcggtggtagcagtggtggt
ggtggtgtcgtcccaccagcgccaccaccaccaccgtcgtcatcttcctcctccgtgctg
gaccgcaaggcccttgcggcggtgctggagttcctgcagaggagtggccttcacgactcg
gtggagacgttgcgtcgcgaggcgtgcgtcgcgagcgaccctggcctcgtgacccccggg
gggactgcctccgccgcagcctccaaagacgcaggggccgcgggcagcagcagcagcagg
gccacgtcggcggacgtcagctcgctcctgtcggcgtacaagcaggcgggcgaggcggca
cgttaccacgacgactacaccgagatgaagcgttttgtggagtcgagcctggactgtcac
aaagcggagctggcgggcctcctgtacccgctcttcctgcacatgtacctggagctcgtt
tatcacgagcatgaggccgaggccaaggcattcttcaccctcttcaacggcgaccaggag
ccctgctaccaggacgacctgagggtgctgtccggactgtcgaagaggcagcacttgctg
cgtggggacaccagctcggcgctgctctcctcgttccgcaccggcaagttcgtggttcgc
atggctcgcgacagctatgccggcctgcgcagacacctgcaggagcgccccacgtcgcga
gcatcgctcatcacgcaggagcacgtgtacgtggacgtgtacgacggcgcgccccgcacc
gccgcgcaggtggcgctcacctcgggcgccatggggggcgaggcgccgcgtcacgccaac
aagtccaaggtttactacgggctgctcaaggagccggagctagaagtccctccggacgac
gaggatgaggagggggcaggggagggtgaagaggggcggcccaagaagaagaagtcgaag
aaggaagcgacggccgggaagagcaaaaaacaggacccgaatgccccccccatcactcgg
attccgttgcccgagctgaaggactcggacaagctggacaaggtgatcgctctcaaggag
agcatgaagcgggtacgcctgggccctgactgcctgccctccatctgcctctacaccttc
ctcaacgcctaccagggcctgtcctgctgcgacatttctgatgactcgagcctcgtcgct
gccggcttttccgactccaccgtgcgggtgtggagcctcacgccgaagaagctgcgctgc
atcaaaccatccagcgaattggtcctcatcgacaaggaggcagacgacgtgatggagcgg
atcatggacgatcgcacgacgagcgactcgaagctgctgctcggccacgggggacccgtc
ttctccaccagcttcagccccgagagggcatggctgttgtcctcctccgaagacggcacg
gtgcgcgtgtggtcgctccacactttcacgtgtcttgtagcgtaccggggacacatctgg
cctgtctggcacgcctccttctccccgcacggacactacttcgtgtcggccgggcatgac
cgcaccgcacggctgtgggtgatggaccaccaccaggcggtgcgcgtgttcgcgggccac
ctcagcgacgtcacgtgcgcctgcttccaccccaactccaactacgtggccacgggctcg
gcggaccgctcggtgcgcgtgtgggacgtcctgaacggggcctgcgtgcgcacactcacg
ggacacaagggctccgtccactgtgtggcattttcgccaaacgggcgattcctggcgtca
ggtggcgccgacagccgagtgttgctgtgggacatcgcgcatggactccccattgccgag
ctcaagggtcacacggacaccgtgtacacgctgaagttcagccgcgacggggaggtgctc
gcttcaggcggagcggactgctgcgtgcgcctgtgggacgtgacgcgggccgtcgacgag
ctggaccccgacgacttcgtgtcggcgtcgctgcactcgccgcccgcggagcacgcggcc
gacctgacgctgggcgcgcacttcaccaagagcacgcccgtggcgcacctgcacttcacg
cgccgcaacctgctgcttgcgtgcggcgcgttcacgccctga
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