Lethenteron reissneri (Far Eastern brook lamprey): 133341313
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Entry
133341313 CDS
T09663
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
133341313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrj03400
]
133341313
DNA repair and recombination proteins [BR:
lrj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
133341313
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
AAA_29
Motif
Other DBs
NCBI-GeneID:
133341313
NCBI-ProteinID:
XP_061405815
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Position
11:complement(5125780..5151046)
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AA seq
954 aa
AA seq
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MSAVQAKEQLSLEPAQENGFVSFFASMGDKAEATVRLFDRLDFYTVHGRDALLVSRDVFK
TTAVVKMLGTGSRKLESVVLSKMNFESVVRDLLLVRQYRVEVYRNRAGKASRDNDWQLAY
KASPGNLAQFEDILFGNVDMSSSAGVVAVKLGLACGVGAGGTAAAAASGSGGADAQRVVG
VGFADTTLRRLCVCEFPDNDQFSNLEALLVQLGPKECVLPAGEAQADAGKLRQVVQRSGL
LITDRKKVEFSSKDIVQDLNRLLKTRKGEQANSAALSEMEKQVAMSSLAALVKYLELTSD
ESGFGQFELSTFDLGQYVRLDSAAVRALNLFQGSSDEGGRTQSLFGLLNRCRTAQGQRLL
AQWIKQPLLDQNRIEERLDVVESLVDDPDLRQALQEELLRRFPDLGRLSKRFQRRAATLQ
DCHRVYQAAGLLPTLVGALQRHQGPRQALLEELFVQPLLELENDFSKFQEMIETTLDMEQ
VENHEFLVKSTFDPNLEELRSRMNELERDMDKALSSTARDLGLEAGKTVKLDSNAQLGFY
FRVTSKDEKALRNNKKYSTIDSQKNGVRFTNSKLSALNEEYVRCRDDYQETQKAIVVEII
NISAGYTEPMQLLSDVVARLDVLTSLALVSHSAPVAYVRPRLSPPGGDLVLKGARHPCLE
AQDDVAFIPNDVAFHRAGTTFHIITGPNMGGKSTFIRQTGVIVLMAQMGCFVPCDEASVS
VVDCILARVGAGDSQLRGVSTFMAEMLETSAILRSATENSLVIIDELGRGTSTYDGFGLA
WAISEHVATRLRALCLFATHFHELTALAGHVPSVSNLHVTALTSHQTLTMLYRVRKGVCD
QSFGIHVAELAHFPPHVVESARRKALELEEFQALDVASDVDGEPAVKKLRSEREEGEQIV
RDFLDKVKALPLDSMAADEVARALAGLKQEVAERGNAYVNGLVARAGERGVTAS
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggtgcaagcgaaggagcagctgagcctggagcccgcgcaggagaacggcttc
gtgagcttcttcgcctcgatgggcgacaaggccgaggccaccgtccgcctcttcgaccgc
ctcgacttctacaccgtccacggccgcgacgctctcctcgtctcccgagacgtcttcaag
accacggctgtcgtcaagatgctgggcaccggctcgcgcaagctcgagtcggtggtgctc
agcaagatgaacttcgagtcggtggtgcgggacctgctgctggtgcggcagtaccgcgtc
gaggtgtaccgcaaccgcgccggcaaggcctcgcgcgacaacgactggcagctcgcctac
aaggcatctccgggaaacctggcgcagttcgaggacatcctcttcggtaacgtggacatg
tcgtcctccgccggcgtcgtggccgtcaagctgggcttggcttgtggcgtcggcgccggc
gggacggccgccgccgcggccagcggcagtggcggcgccgacgcccagcgcgtggtgggc
gtcggcttcgccgacaccacgctgcgccggctgtgcgtgtgcgagttccccgacaacgac
cagttctccaacctggaggcgctgctcgtgcagctggggcccaaggagtgcgtgctgccc
gcgggggaggcgcaggccgacgccgggaagctgcggcaggtggtgcagcggagcgggctg
ctcatcaccgacaggaagaaggtggagttttcctccaaggacatcgtccaggacctcaat
cgcctgctcaagacgcgcaagggcgagcaggccaacagcgccgcgctgtccgagatggag
aagcaagtagcaatgtcgtcgctcgccgcccttgtcaagtacctggagctgacgtccgac
gagtcgggcttcggccagtttgagctgagcaccttcgacctgggccagtacgtgcgcctg
gatagcgccgccgtgcgcgccctcaacctcttccagggctcgtcggacgaggggggccgc
acgcagtcgctgttcgggctcctcaaccggtgccgcacggcgcagggacagcgactgctg
gcgcagtggatcaagcagccgctgctggaccagaaccgcatcgaggagaggctggacgtg
gtggagtcgctggtggacgacccggacctgcgccaggcgctgcaggaggagctgctgcgc
cgcttcccggacctgggccgcctgtcgaagcgcttccagcggcgcgccgccacgctgcag
gactgccaccgcgtgtaccaggcggcgggcctgctgcccaccctcgtcggcgccctgcag
cgccaccagggccctcgccaggccctgctggaggagctgtttgtgcagccgctgctggag
ctggagaatgacttctccaagttccaggagatgatcgagacgacgctggacatggagcag
gtggagaaccatgagttcctcgtgaagtcgaccttcgatcccaacctggaggagctgcgg
agtcgcatgaacgagctggagcgagacatggacaaggcgctgagctccactgcacgggac
ctcggtctggaggccggcaagacggtgaagctggactcgaacgcgcagctcggcttctac
ttccgcgtgacgagcaaggacgagaaggcgctgcgcaacaacaagaagtactcgaccatc
gactcgcagaagaacggagtgcgcttcaccaacagcaagctgagcgcgctgaacgaggag
tacgtgcgctgccgcgacgactaccaggagacgcagaaggccatcgtcgtcgagatcatc
aacatctccgccggctacacggagcccatgcagttgctgagcgacgtggtggcgcggctg
gacgtgctgacgagcctggcgctggtgtcgcactcggcccccgtggcatacgtgcgcccg
cgtctgtcgccgcccggcggtgacctggtgctcaagggggcgcggcacccttgcctcgag
gcccaggacgacgtcgccttcatccccaacgacgtcgccttccaccgcgccggcaccacc
ttccacatcatcaccggccccaacatgggcggcaagtcgacgttcatccggcagacgggg
gtgatcgtgctcatggcgcagatgggctgcttcgtgccgtgcgacgaggcgagcgtcagc
gtcgtcgactgcatcctggcgcgcgtcggcgccggcgacagccagctccgtggagtctcc
accttcatggctgagatgctcgagacgtccgccatcctccggtcggccacggagaactcg
ctggtgatcattgacgagctgggccgcgggacgtcgacctacgacggctttgggctggcg
tgggccatctcggagcacgtggccacgcgcctgcgtgccctctgcctcttcgccacgcac
ttccacgagctgacggcgctcgccggccacgtgcccagcgtgtccaacctgcacgtgacg
gcgctcacctcgcaccagaccctcaccatgctctaccgcgtgcgcaagggcgtgtgcgac
cagagttttgggattcacgtggcggagttggctcacttcccgccgcacgtcgtggagagc
gcgcggcgcaaggccctggagctagaggagttccaggccctggatgtcgcgtcggacgtg
gacggagaaccagccgtcaagaaactccgctccgagcgagaggagggcgagcaaatcgtg
cgcgacttcctggacaaggtgaaggccctgccgctggactcgatggcggcggacgaggtg
gcgcgtgcgctcgcgggcctcaagcaggaggtggcggagcgcggaaacgcatacgtcaac
ggcttggtggcacgcgcgggcgaacgcggcgtcacggccagctga
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