Lethenteron reissneri (Far Eastern brook lamprey): 133341746
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Entry
133341746 CDS
T09663
Symbol
COP1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04115
p53 signaling pathway
lrj04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133341746 (COP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lrj04121
]
133341746 (COP1)
Enzymes [BR:
lrj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133341746 (COP1)
Ubiquitin system [BR:
lrj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133341746 (COP1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
133341746 (COP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EIPR1
zf-C3HC4_2
Beta-prop_RIG_2nd
WDR55
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
zf-C3HC4
zf-RING_2
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
zf-RING_UBOX
zf-RING_5
WD40_RFWD3
zf-C3HC4_3
zf-C3HC4_4
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
WD40_like
RING_XB3-XBAT31
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF12
WDR90_beta-prop_4th
zf-rbx1
Beta-prop_SCAP
zf-RING_10
Vif
Sina_RING
Motif
Other DBs
NCBI-GeneID:
133341746
NCBI-ProteinID:
XP_061406401
LinkDB
All DBs
Position
12:complement(2409158..2439672)
Genome browser
AA seq
658 aa
AA seq
DB search
MSTASVTGSGSSSGPGSNRQASAGSSAGASGSPSGAAGRGTPRGGQRKRPQAPIYNGLVN
SYEDKNNDFVCPICFDMIEEAYITKCGHSFCCKCIRRSLEENNRCPKCNYVIENPNQIFP
NFLLNELILKQRQRIEEKRMKMEQPSGQHWHTIQELLALDQDGLELADVNRMLELLTQKK
MQLEAESTVAQHQLLIEFLQQAHRNKQGQLDQLTKELSVLHGDMRHVEELMQKHHEALVP
QVPQLLETPSTSSLVDSDYPFPAFTDSAQAKRLPCHGNNSMAARRKKLSAHFDDLEQCYF
TCRLSSPSDENKCGQLEEFQDCLAKFTRYSSVRPLATLSYASDIYNGSSIVSSIEFDRDC
DYFAIAGVTKKIKVFEYGTVIRDAVDIHYPVIEMTCNSKISCISWSNYHKGILASSDYEG
TVILWDGFTGQRTKVFQEHEKRCWSVDFNLMDPKILASGSDDAKVKLWSTHLDNSVACIE
AKANVCCVKFSPTSRYHLAFGCADHCVHYYDLRNTKLPVMVFKGHRKAVSYAKFVSGEEI
VSASTDSQLKLWSVNKPHCLRSFKGHINEKNFVGLATNGDYIACGSENNSLYVYYKGLSK
MLLTFKFDMVKSVLEKEKKEDDGSEFVSAVCWRVLPDGDSNVLVAANSQGTIKVLELV
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggcgtcggtgacggggtccggctcttcgtcgggccccggctcgaatcgtcaa
gcctcggccggctcttcggccggagcctcgggctcgcctagcggggctgccgggagaggc
acgcctcgaggcggccaacgcaagcggccgcaagcgcccatctacaacggcctcgtgaac
tcgtacgaagacaagaataacgacttcgtgtgccccatctgtttcgacatgatagaagag
gcgtacattaccaagtgtggtcacagcttctgttgcaaatgcatccgtcggagtctggag
gagaacaatcgttgcccaaagtgcaattacgtcattgagaatccaaaccagatatttccc
aacttcctcttgaatgagctgatcctgaagcagcgtcagcggattgaggagaagagaatg
aagatggaacaaccgagcggccagcactggcatactatccaggagttgctggcgctggac
caagatggcttggagctcgctgacgtgaaccgcatgctggagctgctcacgcagaagaag
atgcagctggaagcggagtcgacagtggcacaacaccagctgctgattgaattcctgcag
caggctcaccgcaacaagcaggggcaactggatcagctgacgaaggagctgagcgtcctg
cacggcgatatgcggcacgtggaggagctgatgcagaaacaccacgaagccttggtgccc
caagtgccccagttgctggagaccccatccaccagcagtttggtcgactcggattacccc
ttccctgcgtttacggacagcgctcaggcaaagcggttaccgtgccacgggaacaactcg
atggcagcaaggaggaagaagctgtcggcacatttcgacgacctggagcagtgctacttc
acctgccgcctgtcgtcgccctcggatgagaacaagtgcggacagctggaggagttccag
gactgcctggcaaagttcacgcgctacagctctgtgcgcccgctcgccacgctttcctac
gccagcgacatctacaatggctccagcatcgtatccagtatcgagtttgatcgggactgc
gattacttcgccatcgctggagtgaccaagaagatcaaggtgtttgagtacggcacggtg
atccgagatgcggtggacattcactaccccgtgatcgagatgacctgcaactccaagatc
agctgcatcagctggagcaactaccacaagggcatcctggccagcagtgactacgaggga
accgtgatcctctgggatggcttcacgggacagaggacaaaggttttccaggaacacgag
aagcgatgttggagcgtagacttcaacctgatggaccccaagatcctagcgtctgggtcc
gacgacgccaaagtcaagctgtggtccacgcacttggacaattccgttgcgtgcatcgaa
gcaaaggccaacgtctgctgcgtcaagttcagccccacgtcgcgctaccacctggcgttc
ggttgtgcagaccactgcgtccactattacgacctgcgcaacaccaagctgcccgtcatg
gtgttcaagggccaccggaaagccgtgtcgtacgccaagttcgtgagcggcgaggagatc
gtctctgcctcgacagacagccagctgaagctgtggagtgtgaataagccccactgcttg
cgctccttcaaaggccacatcaacgaaaagaactttgtggggctggccaccaacggagac
tacattgcttgcggaagtgagaacaactcgctgtacgtctactacaagggcctctccaag
atgttgctcacgttcaagtttgacatggtgaagagcgtgctggagaaggagaagaaggag
gacgacgggagcgagtttgtgagcgccgtttgctggcgggtgctgccggacggggactcc
aatgtacttgtagcagccaacagtcaaggaaccatcaaggtgttggagctggtgtga
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