Lethenteron reissneri (Far Eastern brook lamprey): 133341790
Help
Entry
133341790 CDS
T09663
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133341790 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133341790 (XAB2)
03041 Spliceosome [BR:
lrj03041
]
133341790 (XAB2)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133341790 (XAB2)
Spliceosome [BR:
lrj03041
]
Complex B
Other components
Prp19-related factors
133341790 (XAB2)
Complex C
133341790 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_15
TPR_8
ARM_TT21_C
ARM_TT21
TPR_16
RPN7
TPR_1
Motif
Other DBs
NCBI-GeneID:
133341790
NCBI-ProteinID:
XP_061406490
LinkDB
All DBs
Position
12:complement(5093522..5108906)
Genome browser
AA seq
872 aa
AA seq
DB search
MVSAGPTEAELTVKKTAAKAPPPTTNKKKGGDTDIFFEEDDLPYEEEIIRNPYSVKCWLR
YVEFKQGATNQVVNLVYERALKELPGSYKLWYNYLKLRRKQVKGKCITDPAFEDANNCHE
RALVFMHKMPRIWLDYCQFLMDQCKITRTRRTLDRGLRALPITQHMRIWPLYLKFVGMYP
LPETAVRVYRRHLKLCPENAEEYIKYLVSIDRLDEAAIRQAKIVNDERFISKAGKSNHQL
WHDLCELISKNPDKVKSLKVGAIIRGGLTRFTDQLGQLWCSLADYYIRSGHFEKARDVYE
EAIQTVTTVRDFTQVFDAYAQFEESMISAKMEASGEQGASEDDDLDVELRLARYEQLMDR
RPLLLNSVLLRQNPHNVHEWHKRAKLYEGKPREIINTYTEAVQTIDPVKATGKPHTLWVA
FAKYYEENDQIEDARTIFEKATKVALKSVDDLAGVWCEFAEMELRHENYDEALRLLRRAT
AMPSRKADYFDTSEPVQNRLYKSLKVWSMLADLEESLGTFKSTKAVYDRIIDLRIATPQI
IINYAMFLEEHNYFEESYKAYERGIALFRWPNVFDIWNTYLVKFIERYGGKKLERARDLF
EQALEGCPPKFAKSFYLLYAKLEEEHGLARHAMAVYERGTRGVEPSEQYSMFNIYIKRAA
EIYGVTHTRAIYEKAIEVLQDDHAREMCMRFADMECKLGEIDRARAVYSYCSQMSDPRTT
LSFWQTWKEFEIKHGNEDTVREMLRIKRSVQATYNTQVNFMAAQMLAASSTTTGTVADLA
PGHGPVDEMKLLEQKAQLLAAEAAKDKPKSKEKILFVRSDTSKSELSELAKQSNPDEIHI
DSDNDEEAGEPDEVQVEQKAVPSEVFGGLKED
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggtgtccgcggggccgaccgaggcggagctgacggtgaagaagacggcggcgaaggcg
ccaccgccgacgacgaacaagaagaaggggggcgatacggacatcttcttcgaggaggat
gacctcccctacgaggaggagatcatccgcaacccgtactcggtcaagtgctggttgcgc
tacgtggagttcaagcagggagccaccaatcaggtcgtcaacttggtgtacgagcgggca
ctcaaggagcttcccgggagctacaagctgtggtacaattaccttaagctgcggcggaaa
caagtgaaggggaaatgcatcacagaccctgcgtttgaagacgcaaacaactgtcatgag
agggcgctggtcttcatgcacaagatgccgcgaatatggctcgactactgccagttcctg
atggaccagtgcaagatcacacgtacgcggcgcacgctcgaccgagggctgcgcgccctg
cccatcacacagcacatgcgcatttggccgctctacctcaagttcgtgggcatgtaccct
ctgcccgagacggccgtccgtgtctacaggcggcatctgaagctttgtccagagaatgca
gaggagtacataaagtatttggtctccatcgaccgtctggatgaagcggccatccgtcag
gctaagatcgtgaatgacgagcgcttcatttcaaaggctggcaagtcaaaccaccagcta
tggcacgacctgtgcgagctcatttccaagaacccggacaaggtcaagtcgctgaaggtg
ggggccatcatccgcggcggtctgacgcgcttcacggaccagctgggacagctctggtgc
tcgctggccgactactacatccgcagcggccacttcgagaaggcacgggacgtgtacgag
gaggcgatccagacggtgacgacggtccgcgacttcacgcaggtgttcgacgcgtacgcg
cagttcgaggagagcatgatcagcgccaagatggaggcatcaggagagcagggagcgagc
gaagatgatgacttggacgtggagctgcggctggcgcggtacgagcagctcatggaccgg
aggccgctcctcctcaacagcgtcctgctgcggcagaacccccacaacgttcacgagtgg
cacaagcgcgccaagctctacgagggcaaaccgagagagattatcaacacgtacacagag
gcggttcagaccatagaccctgtgaaggccaccggcaagccgcacacgctctgggtggca
ttcgccaagtactacgaagaaaacgaccagattgaagatgctcgcaccattttcgagaag
gccaccaaggtggcgctgaagagtgtggacgacctggcgggcgtctggtgcgagttcgcc
gagatggagctgcgtcacgagaactacgacgaggccctgcgcctcttgaggcgagccaca
gccatgccgtcccggaaggcggattactttgacacgtcggagccggtgcagaaccgactg
tacaaatctctgaaggtgtggtccatgctggccgacctggaggagagcctgggcaccttc
aagtcgacaaaggcagtttacgatcgcatcattgatctccgcattgctacgccacaaata
ataatcaactacgccatgtttctggaagaacacaactactttgaagaaagctataaggca
tacgagcgagggattgctttgttccgctggcccaacgtgtttgacatctggaacacctac
ctggtgaaattcatcgagcgctacggtggaaagaagctggagagggctcgagatctgttt
gagcaggcattggaaggctgcccacccaagtttgcaaagagcttctacctgctgtacgcc
aagctggaggaggagcacgggcttgcgcgacacgccatggcggtgtacgagcgcggcacg
cgtggtgtcgagccctcggagcagtactccatgttcaacatctacatcaagcgcgccgcc
gaaatctacggcgtcacgcacacgcgcgccatatacgagaaggccatcgaggtgctgcaa
gatgaccacgctcgcgagatgtgcatgcgtttcgccgacatggagtgcaaactcggggag
attgaccgtgccagggccgtctactcgtactgctcgcagatgtcggatccccgcaccaca
ttgtccttctggcagacgtggaaggagtttgagatcaagcacggtaacgaggacacggtg
cgggagatgctacgcatcaagcgcagcgtgcaggccacctacaacacgcaggtcaacttc
atggcggcacagatgctggcagcctcatccaccaccaccggaacagtggctgaccttgca
cctggacacggccccgtggatgagatgaaactacttgagcagaaagctcagcttttggct
gccgaggctgccaaggacaaacccaagagcaaggagaaaattctcttcgtcaggagcgac
acgtccaagagtgagctgtccgagctcgccaagcaaagcaaccccgacgagattcatatc
gactcggacaacgacgaggaagccggggagcctgacgaggtgcaagtggaacagaaggcg
gtgcccagcgaggtgtttggaggactcaaggaggactga
DBGET
integrated database retrieval system
