Lethenteron reissneri (Far Eastern brook lamprey): 133342008
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Entry
133342008 CDS
T09663
Name
(RefSeq) cadherin-4-like isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04514
Cell adhesion molecule (CAM) interaction
lrj04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
133342008
04519 Cadherin signaling
133342008
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lrj04515
]
133342008
Cell adhesion molecules [BR:
lrj04515
]
Cadherins
Major cadherins
133342008
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_CLSTN
CADH_Y-type_LIR
Borosin_clasp
Motif
Other DBs
NCBI-GeneID:
133342008
NCBI-ProteinID:
XP_061406853
LinkDB
All DBs
Position
13:complement(3385027..3443183)
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AA seq
964 aa
AA seq
DB search
MSPHAGLPSPCPNLAGNILAQLFEAEDSETNLPLQNKVADNIRSFRRKRSAVSIGRSLHW
HDLFTVKNKHRVKRQWNIPPISIPENDANHFIKYPVSITSDQNQYIDVRYKLTGIGADKD
PVGLFTVDPATGFLGLTRAVDREEYSVFTLQGHAFSLQGRRVEEPCNLTIAVIDQNDNFP
IFTVTSLAGFVLEHSQVGTTVMNIIAMDADDPKTMNGQVQYELISGSNIFSLDKFTGTVM
VASAVLDREVTEEYTITVKASDSQGLPFALTTLAKSVITIVDINDNAPIFVVRELYATVV
ENTIKMDVVRISVTDRDKVNTKHWWAVYSIASGDMQQHFQIITDRKTNEGVVSLNKTLDY
EETKRYELSITVQNETPLVGVTPITQICRVIITVVDQAEPPVFMPVQTVVTRKYGVAKGS
SVATVLARDPDNEHNTNIRYEILRDAANVLVINSMTGEVTSKAQLSRDSSFIYNNTYTAT
VIAIKDGSPSLTGTGTVIIIVDGADNGRLSLVSSSYCVEKASQQAQLTLVARDDGSPGNR
PLTFSLPSSYDNSRYKWTFDATSDTSALMSLEKDNLECGTQEVPVSVTDKPGLSKTSVVS
VKVCDCKAGAGGVIGIHGGMDDRVGGEGGVAGGVPGYAHGGSGIGLSAGALAAIICSLLL
LPLLAVGLFCAASKLFPKKGKAMIVGNDTKGLVVNYMGEAGEQDQDMSAFQAFSMNKQYS
NAEKTVLSSAANLDEQEDSALLKMEAQSISAPMSSANLTEKIVTTSTTMKKTTQHSSSSS
AQRQQQQQQNGVGGIVQAGLGHAAHAGDVANALAAREHVATANGSAAVASSSNVSSIRGT
LRPTSPSARAVSPTVRLGHAGGWAAGHSTATAQFSDGAQQQWQRAAVYREDAPVASETLR
FKSAKAMGGYKLGQENMDKVLYKVKLLVDADPAMMPLDTRLIYSYEGRCTPPDSFSCLTD
LNLQ
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctcacgctggcctgccttctccttgtcctaacttggctggaaatattctggct
cagttgtttgaagcggaagactcggaaactaatctgccgctgcaaaacaaggtggccgac
aacataagaagcttcagaaggaaaaggagcgccgtgtcgattggaagatctctccactgg
cacgaccttttcacagtcaagaacaaacaccgcgttaagaggcagtggaatatccccccc
atcagcattcctgaaaacgatgcgaaccattttataaagtatccggtctcgatcacatct
gaccagaatcagtacatcgacgtgcggtacaagctaacgggcattggtgctgacaaggac
cctgttggactcttcaccgtggacccagcaacaggattcctgggactgactcgagctgtg
gaccgcgaggagtacagtgtcttcactctgcaaggtcacgcattctctctgcaaggcagg
cgggtggaggagccctgcaacttgacaatcgctgtcatcgatcagaacgacaacttccca
atattcaccgtcacctccttggctggctttgtccttgagcactctcaagtcggtaccacg
gtcatgaatatcatagcaatggatgccgatgaccccaagacaatgaatgggcaggtgcag
tacgagctcatctctgggtcaaatattttctccctggacaagttcacgggcacagtcatg
gtggcgagcgcagtgctggatcgagaggtgacggaggagtacaccatcacagtgaaggcg
tcggacagccaagggctgccgtttgccctcaccaccttggcaaagagcgtcatcaccatc
gtcgacatcaacgacaatgcacccatctttgtcgtcagagagctgtatgcaactgttgtg
gaaaacaccatcaaaatggatgtggttagaatttctgtcacagaccgagacaaagtcaac
acgaaacattggtgggctgtgtactcgatcgctagcggagacatgcaacaacattttcaa
atcatcacggaccgcaaaactaacgagggagtcgtgtctttgaataagactctagactac
gaggagacaaaacgctacgagctgtcgatcacggtgcagaacgagacgccgctggtcggc
gtgacgccgattacccagatctgcagggtgatcatcacggtggtggaccaggccgagccg
cccgtcttcatgccagtgcagacggtggtcacgcggaagtacggcgtggccaagggcagc
agcgtggccaccgtgttggcccgggacccagataacgagcacaacaccaacatcaggtat
gagattctgagggacgcggccaatgtactggtgatcaactccatgacgggagaggttact
tcgaaggcccaactcagccgagactcgtcctttatctacaacaacacatacaccgcaaca
gtcatcgctataaaggatggttcgccttctcttaccgggacgggcacggtgatcatcatc
gtggatggcgccgacaatggacgactcagcctggtcagcagcagctactgtgtggagaag
gcgtcgcagcaggcacagctaaccctcgtagctcgggacgatggctcgcccggtaaccgc
ccgctcaccttctccctacccagcagttacgacaactccagatacaagtggaccttcgat
gcgacgagcgacacatcggccttgatgtcgttggagaaggacaacctggagtgcggaact
caagaagtccccgtgtccgtcacggacaagcctggccttagcaaaacgtccgtggtgtct
gtcaaggtgtgcgactgcaaggcgggtgctggcggagtgataggcattcacgggggaatg
gacgatcgagtgggtggagagggtggagtggctgggggtgttcctggctacgcccatggt
ggatctggaattggcctttccgcaggagcgctggctgccatcatctgctcactcctgctt
ttgcctctcctcgctgtgggactgttctgtgcggcctcgaaactgtttccgaagaaagga
aaagccatgattgttgggaacgacacaaaaggattggtcgttaactacatgggagaggca
ggagagcaagaccaggacatgagcgcattccaggcgttcagtatgaacaagcagtactcg
aatgcagaaaaaaccgtgctctcatccgccgccaacctcgatgagcaggaagattctgca
ctgctcaagatggaagctcagagcatctccgcgcccatgagtagcgccaacctcacggaa
aaaatagtaacgaccagcaccaccatgaagaaaaccacgcagcactcgtcgtcatcatcg
gcgcagcggcagcagcagcagcagcagaatggcgtgggtggcatcgtgcaggccgggctg
ggccatgctgcccacgctggggatgtggcaaatgctctggcggcgagggagcatgtggcc
accgccaacggctccgcggccgtcgcgagcagcagcaacgtcagcagcattaggggcacg
ctcagacccacgtccccttccgctcgagccgtgagccccactgtgaggctcggccatgcg
ggtggatgggcggccgggcacagcacggccacagctcagtttagcgacggggcacagcag
cagtggcagcgggccgctgtctacagggaggatgctccagtggccagcgagaccttgcgt
ttcaagagtgccaaggccatgggtggctacaaactgggtcaagaaaacatggacaaggtt
ctttacaaggtgaagttgttggtggatgctgacccagccatgatgccgctggacacacgc
ttgatctacagctatgaagggaggtgcacacctcctgattcattctcctgcctcactgac
cttaacttgcaatag
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