Lethenteron reissneri (Far Eastern brook lamprey): 133342109
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Entry
133342109 CDS
T09663
Symbol
DDX6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133342109 (DDX6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133342109 (DDX6)
03036 Chromosome and associated proteins [BR:
lrj03036
]
133342109 (DDX6)
Enzymes [BR:
lrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133342109 (DDX6)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133342109 (DDX6)
mRNA degradation factors
5'-3' decay
Decapping complex
133342109 (DDX6)
Chromosome and associated proteins [BR:
lrj03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133342109 (DDX6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-GeneID:
133342109
NCBI-ProteinID:
XP_061407029
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All DBs
Position
13:complement(10970466..10990093)
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AA seq
499 aa
AA seq
DB search
MAATRTENGVAVGMGGQMRSSTGPNMLRVNAPTMMSQSKGPMPMSSTALQSASMHGGSQA
QNPGAGSGVKPGDDWKAGLKLPPKDRRVKTSDVTATKGNEFEDYCLKRELLMGIFEKGWE
KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDMKKPYIQALTIVPTRELA
LQTSQICIELSKHMGGVKVMATTGGTNLRDDILRLDETVHVIIATPGRILDLINKGLAKV
DAVQMIVLDEADKLLSQDFVQMLDDIIRAMPRNRQILLYSATFPLSVQKFMNRHLQKPYE
INLMEELTLKGITQFYAYVNERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITQL
GYSCFYIHAKMKQEHRNRVFHDFRRGECRNLVCSDLFTRGIDIQAVNVVINFDFPKNAET
YLHRIGRSGRYGHLGLAINLITYEDRFNLKGIEEQLGTEIKPIPGTIDKSLYVAEFHSEP
DEGGSTQQPAQQPPSQQQP
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggctgccacacgcacagaaaacggtgttgccgtgggcatgggcggccagatgaggtcc
tcgacagggcccaacatgctccgagtgaacgcgcccactatgatgtctcagtccaagggc
ccgatgcccatgtcttcgacagcgctgcagtcggcgagcatgcacggagggtcccaggcg
cagaacccaggcgcgggcagcggtgtcaaacctggtgatgactggaaggcaggtctgaag
ttgccaccaaaagacagaagagtaaagacttcagacgtgaccgccacgaaaggaaacgag
tttgaggactactgcctgaagcgtgagctgctcatgggcatttttgagaagggctgggaa
aagccctctccaatccaggaagagagcatccctattgcactgtctgggcgggatattctg
gcgcgtgccaagaacgggaccggtaaaagcggagcctacctcattcccctgctagagcgt
ctggacatgaagaagccctacattcaagcactaacgattgtgccgacgcgtgagctggcg
ctgcagaccagccagatctgcatcgagctcagcaagcacatgggtggcgtcaaagtcatg
gccaccaccggcggcaccaacctgagagacgacattctacgtctcgacgagactgtgcac
gtcataatcgcgacacctggccgcatcctggacctcatcaacaagggcctggccaaagtg
gatgccgtgcagatgattgtgctggatgaggccgacaagcttctgtcgcaggactttgtg
cagatgctcgatgacatcatccgtgccatgccgcgcaaccgccagatcttgctgtactcc
gccaccttcccgctgagtgtgcaaaagttcatgaatcggcacctgcagaagccgtacgag
ataaacctgatggaggagctcactctgaagggcatcacacagttctacgcttacgtcaat
gagcgccagaaagtgcactgtctgaacacgctcttctccaagctgcagatcaatcagtcg
atcattttctgcaactcaactcagcgcgtggagctgctggccaagaagataacacagctc
ggctactcttgcttttatatccacgccaagatgaagcaggagcatcgtaatcgtgtgttc
cacgacttcaggaggggagaatgtcggaacctggtgtgttccgatctgttcacccgagga
attgacattcaggctgtgaatgtggtcatcaactttgacttcccaaagaatgccgagacg
tacctgcatcgcattggccgttccggccgctatggccacctgggcctggccatcaacctg
atcacgtacgaggaccgcttcaacctgaagggcatcgaggagcagctgggcaccgagatc
aagcccatcccgggcaccattgacaagagcctgtacgtggccgagttccacagtgagcca
gatgagggcggcagcacacagcagccagcccagcagccgccatcgcagcagcagccctaa
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