Lethenteron reissneri (Far Eastern brook lamprey): 133342179
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Entry
133342179 CDS
T09663
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133342179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133342179
Enzymes [BR:
lrj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
133342179
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133342179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
133342179
NCBI-ProteinID:
XP_061407127
LinkDB
All DBs
Position
14:complement(2204264..2233507)
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AA seq
536 aa
AA seq
DB search
MCDINIDNFFQKLPEMREAIFQADFIAIDTELSGLDAGPLSRFSLFDSPRDHYARRRESA
QVYSIVQLGLSAFKQDNEVEGRFSVRTYNVYLCPAAVLGSGSSITWELPAIIFLRRHGLD
IAQVVREGVPYLNWEQEKSLAREVESNPTALLSLEWGEPVWDAVTSWLSEAKPGDSTVLT
ETGLLTPGPSTRLLHWVLRSTFPSIWTSEKDGQLLLMRVTPSGREQQEASTPGDLCPLGL
MRSMLGVTSVIRYLVEAQKPLVGHSMYLDLLHVFQSFIAPLPESYGNFKRSLSELFPSVY
DTKHMALASEKMLQRNDVCHMDTLENLYMAFKRVMPWKLYAPSMLHAPGFEKYMEGGKPH
EAGYDAFMTGSVFLMMTYLSVMEGLCGRLQARPQMSDYLWAAQPFVNRVHMMRSYTAYMN
LAGADPAARSSVMLVVSERRGGGGAGGVCARVTAAVRSRSCCDVRPLGPRRALVCLTGLR
GMQDVRSRLLDTGKFHVRLYRPWMDSRLASTLFWGSGLMMAMSLFLWLVPSSSKNQ
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgacatcaacatcgacaacttcttccagaagcttccggagatgagagaggcgatc
ttccaggctgacttcattgctatcgacacggagctgagtgggctggacgcggggcccctc
tcgcgcttcagtctgttcgactccccacgagaccactacgcccggaggagggagagcgcc
caagtctactccatcgtgcagcttggattgtcggccttcaaacaggacaatgaggtggaa
ggcaggttcagtgtgcgcacgtacaatgtgtacctgtgccctgctgcggttctgggctcc
ggttcgagcatcacctgggaactcccggcgatcatcttcctgcgcagacacggcttggat
atcgcccaggtggtgagggagggagtcccgtatctcaactgggagcaggagaagtccctg
gctcgggaagtggagtccaaccccacggcactgctctcgctggagtggggcgagccggtg
tgggatgccgtcacctcttggctgtcagaagccaaacccggagactccactgtgctcacc
gagaccgggctcctgacacccggcccctctactcgcctcctgcactgggttctccgttcc
acgttcccctccatctggacctcggagaaagatggccagctgctgctcatgagggtcact
ccgtcgggccgggagcagcaggaagcttccacgcccggtgacctttgccccctcggcctg
atgcgaagcatgctgggagtcacctctgtgattcgctacctggtggaggcacagaagcct
ctggttggtcacagcatgtacctggatctccttcacgtcttccagagcttcattgcccca
ttgccagagtcctacgggaatttcaagcgctcgctgagcgagctcttcccctccgtgtac
gacaccaagcacatggccctggcctccgagaagatgctgcagaggaatgatgtgtgtcat
atggacacgctggagaacctttacatggcattcaagagggtgatgccctggaagctctac
gctccttccatgcttcacgctccggggtttgagaaatacatggaaggagggaagccgcac
gaggctgggtacgacgccttcatgaccggctccgtgttcctcatgatgacctacttatca
gtgatggaaggcctctgcggccgtctccaggcgaggcctcagatgagcgactacctgtgg
gccgcgcagccatttgtaaaccgcgtccacatgatgcgctcctacacggcctacatgaat
ctggctggcgctgatccggcggcgcggtcctcggtgatgttggtggtgagcgagagacgc
ggtggtggcggcgctggcggagtctgtgcgcgcgtcactgcggccgttcgctcccgcagc
tgctgcgacgtgcgtccgctgggaccgcgtcgggcgctcgtctgcctcacgggactgcgt
gggatgcaggatgtgaggtcgaggctgctggacaccgggaagttccacgtgcgactttac
agaccctggatggactccagactcgcgtccaccctcttctggggcagtggattgatgatg
gccatgtctctcttcttgtggctcgtgcccagttccagcaagaatcagtga
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