Lethenteron reissneri (Far Eastern brook lamprey): 133342377
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Entry
133342377 CDS
T09663
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
133342377 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrj03400
]
133342377 (MSH6)
DNA repair and recombination proteins [BR:
lrj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
133342377 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Metal_resist
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
133342377
NCBI-ProteinID:
XP_061407484
LinkDB
All DBs
Position
14:complement(10209193..10238561)
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AA seq
1418 aa
AA seq
DB search
MSQKNTLFKYFNKSPGLTTKAKSAGSPTEADPPPPGASSPPTEKERGPRAANAKQERGSD
GAQAREAAKAPKTPKSSEESEFQPGDLLWAKLEGYPWWPSLVYDHPESGAHTRGRGKSLR
IHVQFFDTPPTRSWVGAKYCKLYNGSSSKEAQRGGVFFSTNPQILGAMKQADKAIPLSME
KRLDLAVCVEPSDEEDDDEADEEMEVDATASDVEANGKGDGEEEEEEDDGGSDGTACETR
TPSRSTRKTALEKNGRKNKRRRIVMPSDTEDSDAEFKPDTVNASSDEASSGVDEKEASEP
ESASDPESPVKKRKRTATKAPAITPRREPMMLGLSSVASSGKAATPKQAQTGSNAKAKLS
AFSSDALESQNGGGQDGGKEGGGWDHEKLDWLRDGKRRDGKRRLQSDPEYDPSSIYVPDS
FLSACTPGMRRWWEIKSTLFDTVLFFKVGKFYELYHMDAQTGVSELGLLFMKGSWAHSGF
PEISFARFSDGLVQKGYKVARVEQTETPDMMEARCRTMARPATKFDKVVKREVCRIITKG
TQTYSILDGDPSDAQNKFLLAVREREGPTGGSGSNGGANETGASVRTYGVCFVDTSVGDF
HLGQFTDDRHCSRFRTLVAHHAPAQVLYERGGLSAETQKIVRVTLASALQDALTPSTQFW
DATKTLKMLAEEGYFKVEDEHGGSSGGSGGALPPVLRAMTSASDSLGLAAADEAELALSA
LGAVLFYLRKCLIDHELLSMGNFRRYQPPDLALAGDAHNGHHDGDEDDDEEEVGSTGLAT
RRMVLDGVTLTNLEVLQSSTTGGVEGTLLVRLDSCLTPFGRRLLRAWLVAPPCDPRAIDD
RLDALEDLMAVPDKVAQVKDLLRKMPDLERLLSKIHGLGTPLRASRDHPDSRAVLYEETA
YSKRKIADFLSTLEGFRAASQAAGLLQKCVGDFKSRLLRKVVSTEDGGHFPDLSPELQRW
DTAFDHQKARSSGVITPRPGFDPEYDQALLDISANKKLLDEYLEKQRKRLSCKSIVFWGT
GRNRFQMEVPDAVAQRNTPEEYQLKSTKKGFRRFYSPEIERLMALLSDAEERRDIAMRDC
MRRLFYNFDTSYKQWSAAMHCMAVLDVLLSLAHYSEQGGEGANPMCRPSVRPPPSEGGSS
GGGPFLELRGSRHPCVSTTFLGDSFIPNDVVVGLSDGADDDGGGARCVLVTGPNMGGKST
LMRQAGLIVIMAQLGCYVPAEACRLTPVDRVFTRLGASDRIMSGESTFFVELSETSSILQ
HATRHSLVLLDELGRGTATYDGTAIASAVVHELAEGVRCRTLFSTHYHSLVEDFAASPHV
RLGHMACMVEQENDDDPSQETITFLYKFVAGACPKSYGFNAARLAGLPDTVVRAGHRKAR
EFESNTNALRAFRMLCSMSEGSFHLEKLKDIQRMIGEL
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagaagaacacgctcttcaagtacttcaacaaatcgccgggcctgaccaccaag
gccaagagcgctggctcgcccaccgaggccgacccgcctcccccgggggcctcgtctccg
cctaccgagaaggagcgcggtccgcgggcagcgaacgctaagcaagagcgcggctccgat
ggggcccaggcccgagaggcggcgaaggcgccaaagacgccaaagtcttcggaagagagt
gagttccaaccaggtgacttgctgtgggccaagctggagggatacccgtggtggcccagc
ctggtgtatgaccaccccgagtccggagcacacacacggggccgcggaaagtccctgaga
atccacgtgcagttttttgatactcctcctacccgcagctgggtcggtgcaaagtactgc
aagctctacaatggatccagctcaaaggaagcgcagaggggaggcgtcttcttcagcacc
aatcctcagatcctgggggccatgaagcaggccgacaaggcgattccgctgagcatggaa
aagcgcctagacctcgccgtgtgtgtggagccgtcggatgaagaggacgacgatgaagct
gatgaagagatggaggtggatgcgactgcgtcggacgtggaagcgaacggaaagggtgac
ggcgaggaggaagaggaggaggacgacggcggaagtgatggcaccgcgtgcgagacgcgc
accccttcgcgctcgacgcgcaaaacggcactcgagaaaaacggtcggaagaacaagcgc
cgccgcatcgtgatgccctccgacaccgaggatagcgacgccgagttcaaaccggacacg
gtcaatgcgagcagcgacgaggcgagcagcggtgtcgatgagaaggaagcaagcgagccc
gagtccgcctccgacccggagtcgcccgtcaagaagcgcaagcgcaccgcaaccaaggct
cccgccataacgcccaggcgcgagccgatgatgctgggtctgagcagcgttgcgtcgtcc
ggaaaggcggcgacccccaagcaagcccaaacgggttccaatgccaaggccaagctgtcc
gccttctcgtcggacgccctcgagagccagaatggcggggggcaggatggcggaaaagag
ggtggcgggtgggaccatgagaagctggactggctgcgggacggcaagcgtcgcgacggc
aagaggcggctccagtcggaccccgagtacgacccttcctccatctacgtccccgattcc
ttcctgtccgcgtgcacgcctggcatgcggcgctggtgggagatcaaaagcacgttgttc
gacaccgtgctcttcttcaaggtgggcaagttctacgagctgtaccacatggacgcgcag
acgggcgtgtcggagctgggcctgctcttcatgaagggctcatgggcccactcgggcttc
ccagagatctcctttgcgcgcttctccgacgggctggtgcagaagggctacaaggtggcg
cgagtggagcagacggagacgcccgacatgatggaggctcgctgccgcaccatggctcgc
ccagccacaaagtttgacaaggtggtgaagcgcgaggtttgccgcatcatcaccaagggc
acgcagacgtacagcatcctcgacggcgatccctcagacgcgcagaacaaattcctgctg
gccgtacgcgagagggagggcccgaccggcggcagtggcagcaatggcggcgccaacgag
acgggggcgtccgtgcgcacgtacggcgtgtgtttcgtcgacacgtctgtcggggatttc
cacctgggccagttcacggacgaccgccactgctcgcgcttccgtacgctcgtggcgcac
cacgcacccgcgcaggtattgtacgagcgcgggggcttgtcagccgagacgcagaagatt
gtccgtgtgacgctggcatcggcactgcaggatgctctgacgccctccactcagttctgg
gatgccaccaagacgctcaagatgcttgcggaggaaggctacttcaaggtcgaggacgag
cacggaggcagcagtgggggcagtggcggtgccctgccgcccgtgctgcgcgccatgacg
tccgccagcgactcgctgggcttggcggcggcggacgaggcggagctggcgctctccgcc
ctgggggccgtgctcttctaccttcgcaagtgcctcatcgaccacgagctcctctccatg
ggcaacttccgccgctaccagccgcccgaccttgcgctcgccggcgacgcgcacaacggc
caccatgacggcgacgaggatgatgatgaggaggaggtgggcagcacgggactcgcgact
cgccgcatggtgctggacggcgtgacgctcaccaacctggaggttctgcagagcagcacg
acgggcggcgtggagggcacgctgctggtgcgcctcgactcgtgcctcacgccgttcggg
cgccgcctgctgcgcgcctggctggtggcaccgccgtgcgacccgcgagccatcgacgac
cgcctcgacgcgctggaggacctcatggccgtccccgacaaggtggcgcaggtgaaggat
ctcctgcgcaaaatgcccgacctggagcggctgctgagcaagatccacggactgggcacc
ccgctgcgcgcgagccgcgaccacccggacagccgtgccgtcctctacgaggaaacggcc
tacagcaagcgcaagatcgccgacttcctgtccactctcgagggcttccgcgccgccagc
caggctgctggcctgctgcagaagtgcgtgggcgacttcaagtcgcggcttctgcgcaag
gtggtgtctacggaagacggggggcacttcccagacctgtcccccgagctgcagcgctgg
gacacggcgttcgaccaccagaaggcgcgcagctcaggcgtcatcaccccacgtccaggc
ttcgaccccgagtatgaccaggcgctcctggacatctccgccaacaaaaaattgctcgat
gaatacttggagaagcagcgcaagcgtctgagctgcaagtccatcgtcttctggggcact
ggtcgcaaccgcttccagatggaggtgccggacgccgtggcgcagaggaacactcccgag
gagtaccagctcaagtcgaccaagaagggcttccggcgattctactcgcccgagatcgag
cggctgatggcacttctctcggacgccgaggagcggcgcgacatagccatgcgcgactgc
atgcgccgcctcttctacaacttcgacaccagctacaagcagtggagcgccgccatgcac
tgcatggccgtcctcgacgtgctcctcagcctggctcactacagcgagcagggcggagag
ggcgccaaccccatgtgccgcccgagcgtgcggccgcccccctcggagggcggctcgtcg
gggggggggcccttcctggagctgcgtggctcccgccacccctgcgtctccaccaccttt
ctgggcgacagcttcatccccaacgacgtggtggtgggcctttcggacggagccgacgac
gacggtggcggcgctcgttgcgtgctcgtcacgggacccaacatgggcggcaagtcgacg
ctcatgcgccaggcggggctcatcgtcatcatggcacagctgggctgctacgtgccggcc
gaggcgtgccgcctgacgcccgtggaccgcgtgttcacgcggctgggggcgtctgaccgc
atcatgtctggggagagcacgttcttcgtggagctgagcgagacgtccagcatcctgcag
cacgcgacgcgccactctctcgtgctgctcgacgagctcggccgcggcacggcgacgtac
gacgggacggcgatcgcgagcgccgtggtgcacgagctggccgagggcgtgcgctgccgc
accctcttctccacacactaccactcgctcgtggaggacttcgcggccagcccacacgtg
cgcctgggccacatggcgtgcatggtggagcaggagaatgacgacgaccccagccaggag
accatcaccttcctctacaagttcgttgccggcgcgtgccccaagagctacggcttcaac
gccgcccgtctggccgggctgcccgacacggttgtgcgggcaggacaccgcaaggcacgc
gagttcgagagcaacaccaacgccctacgtgcattcaggatgctgtgttccatgtcggag
gggagctttcaccttgagaagctgaaggacattcagaggatgatcggcgagctgtga
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