Lethenteron reissneri (Far Eastern brook lamprey): 133342435
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Entry
133342435 CDS
T09663
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
133342435 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrj03021
]
133342435 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133342435 (SUPT5H)
Transcription machinery [BR:
lrj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
133342435 (SUPT5H)
RNA polymerase I system
133342435 (SUPT5H)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
133342435 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
CTD
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribosomal_uL24m-like
Motif
Other DBs
NCBI-GeneID:
133342435
NCBI-ProteinID:
XP_061407606
LinkDB
All DBs
Position
14:13553086..13574001
Genome browser
AA seq
1083 aa
AA seq
DB search
MSDSEGSNSSDNEEQESFHGSEAEEAEEDEPSEKGSVTGSDKEGEGEGEDLVDEDEYDEE
EEEDEESGRTRKKPRHSQFILDEADVDDEYEDDEQWEEGAEDILEKATNIDDVPIRNDDN
SGARRLQNLWREQREEELGEYYMKKYANSSTGEHYGVGGSDELSDDITQQQLLPGVKDPN
LWTVKCKLGEERATAIGLMRKFIAYQFSDTPMQIKSVIAPEHLKGYIYIEAYKQTHVKQA
IEGVGNLRMGFWNQQMVPIKEMTDVMKVVNEVTNLKPKSWVRLRRGIFKDDIAQVDYVEP
SQNTIGLKLIPRIDYERIKSRMSMKDWFAKRKRYKRPPQRLFDVDKIRSLGGEVTSDGDF
LQFEGNKYTRKGFLIKGFAMSAVIIEGVKPTLSELEKFEDQPEGVDLELVSEAKGKGEKD
HNFQPGDNVEVCEGELINLQGTVLSVDGNKITIMPKHEDLKDPLEFPAHELRKYFKIGDH
VKVIAGRYEGDTGLIVRAEENFVILFSDLTMHELKVLPRDLQLCSETASGVDSGGQHEWG
ELVLLDPQTVGVIVRLERETFQVLNMYGKVVTLKHQAVTKKRDNRHAVALDSEQNNIQVK
DIVKVIDGPHSGREGEVRHLYRSFAFLHSKRLVENGGMFVCKTRHVVLAGGAKPRDVTNF
SVGTFAPKSPRLASPMHPSGGGMQRMQQNMGRGRGRRDTELIGQTVRITHGPYKGYIGVV
KDATESTARVELHSTCQTISVDRTRLHSMRDGIRRTGQTSTYGRTPMYGSQTPMYGSGSR
TPMYGSQTPLHDSAGNRTPHYGSQTPLHDGSRTPGQSGAWDPSNANTPSRQDDDFEYTFD
EPSPSPQPYGGQSTPQTPGYTDVPSPQVNTTYNPQTPGTPALYNTDQYSPYPTPSPQGSY
HPTPSPQSFHPAPSPMGYQNTQSPASFHPTPSPMAYQSSPSPSPLGYSPMTPGAGSPAGY
NPLTPGSAIDPSTADWHTIDILVGVRDSSPDTQLVGQKGVIRSISGGMCSVYLPDSDKVV
SIASDHLEPVIPAKYDKVKVILGEDREATGTLISIDGEDGIVRMELDNQLKILNLRFLGK
LET
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaaggcagcaactcctcggacaacgaggagcaggagagcttccacggc
agtgaggccgaagaggcagaggaggatgaaccctcagagaagggcagcgttactggcagc
gataaggaaggagaaggagaaggcgaggacttggtagatgaagacgagtatgatgaggag
gaggaagaggatgaggagtcgggtcggacaaggaagaaacctcgtcacagccagttcatc
ttggatgaagctgatgtcgatgatgaatatgaggacgacgaacagtgggaagagggagca
gaagacatccttgagaaagccacaaacattgatgatgttccgattcgaaatgatgacaat
tctggtgcgcggaggttgcagaacctatggagggaacagcgtgaggaggaattgggtgag
tattacatgaagaaatacgccaatagctcaactggagaacactatggagttggtggttcc
gatgaactatcagatgacattactcaacagcaacttttgcctggagtcaaggatcccaat
ttgtggacagtgaagtgcaagcttggcgaggagcgagccacagccattggactgatgcgg
aagttcattgcttaccagttctctgacactccaatgcaaatcaagtcggtgatagccccg
gagcacctgaagggctacatctacatcgaggcctacaagcagacccatgtgaagcaggcc
atcgagggagtcgggaacctgcgcatgggcttctggaaccagcagatggtgcccattaag
gagatgacggacgtgatgaaggtggtgaatgaggtgaccaacctcaagcccaagtcctgg
gtgcggctcaggaggggaatcttcaaggatgacattgcgcaggtggattatgtcgagccc
agtcagaataccattgggctgaagctcatcccacgcattgactatgaacgcatcaaatcc
cgcatgagcatgaaagactggtttgccaagagaaagcgctacaagaggccaccacagaga
ctctttgacgtcgacaaaataaggtctttgggaggcgaggtgacgtcagatggtgatttt
ctgcagtttgaaggaaacaaatacacccgaaagggtttcctcattaagggcttcgccatg
tcggctgtgatcattgagggagtgaagccgacgctgtctgagctggagaagtttgaggat
cagccagaaggagtcgatttggagctcgtctctgaagctaagggtaaaggtgagaaggat
cacaacttccagcctggagacaacgtggaagtgtgcgagggagagttgatcaatctgcag
ggcacagtgctcagtgtcgatggcaacaaaatcacaatcatgcccaagcacgaagacctc
aaggacccgctcgagttcccagcgcatgaactgcgcaagtacttcaagattggcgaccac
gtgaaggtgatcgcgggccgatacgagggcgacacaggactcatcgtgcgtgcagaggag
aactttgtcatcctcttctctgacctcacaatgcacgagctcaaggtgctgccacgtgac
ctgcagctgtgctcggagacggcgtcgggcgtggactcgggcgggcagcacgagtggggc
gaactggtgctgcttgacccacagaccgtgggcgtcattgtgcgcctggagagggagacc
ttccaggtgctgaacatgtatggcaaagtggtaacgctgaagcaccaggcggtgacgaag
aagagagacaaccggcacgctgtggctcttgactcggagcagaataacatccaagtgaag
gatatcgtcaaggttattgatggtccccattcgggccgagagggggaggtgaggcacctg
taccgcagctttgcgttcctgcactcaaagaggcttgtggagaacggaggcatgttcgtg
tgcaagactcggcatgtggtgctggctggtggggccaagccgagagatgtgaccaacttt
tcagtcgggacatttgcccccaaaagccctcgcctcgccagtcccatgcatcccagcgga
ggaggaatgcagagaatgcagcagaacatgggccgtgggagaggccgcagagacacggag
ctcattgggcagacggtgcgcatcacccatggcccttacaaaggatacattggtgtggtc
aaggacgcgacggagtcgaccgctcgtgttgagctgcactcaacgtgccagaccatttca
gtggacaggacccgcctccattctatgcgggatgggatcaggaggactggccagacatcc
acgtatggtcgcacacccatgtatggctcccagactccgatgtatgggtctggctcacgc
acgccaatgtatggatcgcagacgcccctgcatgatagtgccggcaacaggacgccgcac
tatggctcccagacaccactgcacgatgggagccgtacaccgggacagagtggagcctgg
gatcccagcaatgctaacaccccatccaggcaagatgacgattttgagtacacattcgat
gagccgtcaccgtctccacagccctatgggggccagtccacaccgcagacgccagggtac
acagatgtgccctcccctcaagtcaacaccacctacaacccgcagacgcctggcacaccg
gccctgtacaacacggatcaatactccccgtacccgacgccctcgccgcagggctcgtac
catccgacgccgagcccacagagtttccatccagcacccagccccatgggttaccagaac
acgcagtcacctgccagcttccatccgactccatctcccatggcataccagtcgagcccc
agcccgagcccgctgggctacagccccatgacgccgggcgcaggctcgccagccggatac
aacccgctcacgccaggctccgccatcgaccccagcacggccgattggcacaccatcgat
atcctagtgggcgtgcgcgacagctcgcctgatacccagcttgtggggcagaagggagtc
atacgcagcatctcgggtggaatgtgctcagtttacctccctgacagcgacaaagtagtg
agcattgccagtgaccatctagagccagttatccctgcaaaatatgacaaggtcaaggtg
atcctgggcgaagatcgtgaagcaactgggactttaatcagcatcgacggagaggatggc
atcgttcgcatggagctggacaaccagctgaagatcctcaacctgcgcttcctgggaaaa
ctggagacctaa
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