Lethenteron reissneri (Far Eastern brook lamprey): 133342638
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Entry
133342638 CDS
T09663
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lrj03016
]
133342638 (RTCB)
Enzymes [BR:
lrj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
133342638 (RTCB)
Transfer RNA biogenesis [BR:
lrj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
133342638 (RTCB)
Prokaryotic type
tRNA splicing ligases
133342638 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
133342638
NCBI-ProteinID:
XP_061407902
LinkDB
All DBs
Position
15:complement(6562395..6585840)
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AA seq
505 aa
AA seq
DB search
MSRSYNDEMAFLEKIDQNSWRIKKGFVPNMQVEGKFFVNEQLEKLMFEELRNACRGGGIG
GFLPAMKQIGNVAALPGIIHKSIGLPDVHSGYGFAIGNMAAFDMEDPTSVVSPGGVGFDI
NCGVRLLRTNLEESDVQPVKEQLAQALFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIFDQ
HAARKMGIDHTGQICVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIKS
QEGQDYLKAMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEE
HIVDGKIRTLLIHRKGSTRAFPPHHPLIPVDYQLIGQPVLIGGTMGTCSYVLTGTEEGMR
QTFGTTCHGAGRALSRAKSRRNLDYQDVLNKLADLGIAIRVASPKLVMEEAPESYKNVTD
VVDTCHSAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctcctacaatgacgagatggccttcctcgagaagatcgaccagaacagctgg
cgcatcaagaagggattcgtgcccaacatgcaggtcgaagggaagttctttgtgaacgag
cagctggagaagctcatgtttgaggagctcagaaatgcctgcagaggaggaggtattggt
ggatttctgcccgctatgaagcagatcggcaatgtggctgcattgcccggcattatacat
aaatccattggcttgccggatgttcattctggctatggctttgccattggtaacatggct
gccttcgacatggaagaccccacctctgtggtgtcgccaggcggcgtgggctttgacatc
aactgcggcgtgcggctgttgcgcaccaacctggaggagagtgacgtgcagcctgtgaag
gagcagctggcgcaggcgctgttcgaccacatccccgtgggggtcggttccaagggagtc
atccccatgggtgccaaggacttggaggaggctctggagatgggggtggactggtctctg
cgtgagggctatgcctgggcagaggacaaagaacactgcgaggagtatggcaggatgctg
caggctgaccccaacaaagtctcctctaaggccaagaagagggggcttccacagctgggc
acactgggtgccggaaaccactacgctgagattcaggtggtggatgaaatctttgaccag
cacgcggcacgcaagatgggcatcgaccacaccgggcagatctgcgtcatgatccatagc
ggcagtcgggggcttggccaccaggtggccacagatgcgctggtggcgatggagaaggca
atgaagcgagataagatcatcgtgaacgatcggcagcttgcctgcgctcgcatcaagtcg
caggaggggcaggactacttgaaagccatggccgctgccggaaactacgcctgggtcaac
cgctcctccatgacgttcctcacccgtcaggcttttgcaaaggttttcaacacgacgccc
gacgacctggacatgcacgtgatctacgacgtctcgcacaacatcgctaaggtggaggag
cacatcgtggacgggaagattcggacgctgctcattcatcgcaagggatcgacacgagct
tttcccccacaccacccgctcatccccgtcgactaccagctgatcgggcagccggtgctg
atcggtggcaccatgggcacctgcagctacgtgttgacgggcacggaggagggcatgagg
cagactttcggcaccacgtgccacggagcggggagggccctgtctcgcgccaagtctcgc
cgcaacttggactaccaggacgtgctcaacaaactcgccgacctgggcatcgcgatccgg
gtcgcctcgcccaagcttgtcatggaggaggcgccagagtcgtacaagaacgtgacggat
gtggtggacacgtgccactcggctggcatcagcaagaaggccatcaagctgcgacccatt
gccgtcattaaaggctga
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