Lethenteron reissneri (Far Eastern brook lamprey): 133342901
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Entry
133342901 CDS
T09663
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03030
DNA replication
lrj03410
Base excision repair
lrj03420
Nucleotide excision repair
lrj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133342901 (RFC1)
03410 Base excision repair
133342901 (RFC1)
03420 Nucleotide excision repair
133342901 (RFC1)
03430 Mismatch repair
133342901 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrj03032
]
133342901 (RFC1)
03400 DNA repair and recombination proteins [BR:
lrj03400
]
133342901 (RFC1)
DNA replication proteins [BR:
lrj03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
133342901 (RFC1)
DNA repair and recombination proteins [BR:
lrj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
133342901 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_30
AAA_22
AAA_33
PTCB-BRCT
RuvB_N
AAA_14
TIP49
AAA_17
AAA_16
Rad17
AAA_5
RNA_helicase
nSTAND3
BRCT_2
AAA_19
AAA_7
NTPase_1
AAA_18
Motif
Other DBs
NCBI-GeneID:
133342901
NCBI-ProteinID:
XP_061408260
LinkDB
All DBs
Position
16:complement(7783440..7820684)
Genome browser
AA seq
1286 aa
AA seq
DB search
MRVEVVLARTGARVPPASAGPMDIRKFFAPQAAKLAASGNSSSSSSSGGGSRAAAKVKGK
APPVAKATKATTKATTKADTKAVTKAVTKMATKAASGKRHKEETLKSRVRGKKADKSDDD
DSDDDDDEDDIKGGTKKQKARKKRGIISDSDSDLEEIPPPKKSHSSASSTTKTSAATKTS
KTSKTSKVVTISDSDEDSSSPDMKKGKTKPASGKVPNGHARLPKSSPKNKPSEPRALPRS
PRRGDKPQPAPAAATASRRHVEEKKPSPVKLVPTSVSEYFGTTSVQRSNRTLVAKRKAGS
DSTDESFSPSEPTSAQEDVSKQLEKQLHEDEEFARTLAMLDEEEVAPQHKKARVESFARS
SKTPEKQPALRKRSPVKPTKAAAPPPLVKFEPKVAPKRSPFKAVPLSTVKLSPVKREIDR
SPSSKGAAMGSPARTGSTETSPKSEKGLEDSEKKRQNVAAYRHYLSRDGPRALGSKEIPQ
GGENCLEGLTFVITGVLESLEREEARSLVERYGGKVTGNVSKRTDYLVVGRDPGNSKLDK
AESCRVKQLDEDGLLELIRTRPGKKSKYTIAAETEASKAKFAAKKFPSQPTKLSPDKLTK
TSPEKPTKTSPDKPTSTSPDKPTKEAGGTDQTSTVTRKQLFSAAEQQRRTERTETGWAGR
VTGRGPSAETRSPKKGSGPEVGGDSLLWVDRYRPQSLKNIIGQQGDQSPANKLLRWLRAW
HSNHGGASGGGRKAAPSVGRFRFGGKDDGSGFKAALLSGPPGVGKTTTAALVCQELGLSF
VELNASDRRSKNSMKNEVSTCLRNTSIEGFYHGTAQTVSDRHVLLMDEVDGMAGNEDRGG
MQELIALIKQSKVPVICMCNDRNHAKIRSLANYCFDLRFPRPRVEQIKGAMMSVAFKEGL
KIPPAAMQEIILAANQDIRQVLHNLCVWSAREKALTYDQAKSDAKSAKKDLKMGPFDVAR
KVFIADEETQHMSLMDKSDLFFHDYSIAPLFVQENYVHVRPLAAGGNMKKHLTLLSKTAD
SIAQGDLVDRQIRSNQSWGLLPTQAIFASVIPGELMRGYMSQFPSFPSWLGRHSTTGKNA
RILQELTMHMSLRTHSCQRAVNLEYLGALRNELARPLQTRGSEGVAQTLSLMDDYCLTKE
DVDSLMEVSSYHGSTDPLAKLDPKVKAAFTRAYNKESHLTPYSLAVGPKKGRRGPGGGGS
NEEGEGFDGAEGDGAAAVPDSASEHEDDMDISADAMIKQKKKPAKKASKETSSPSKAGAS
SKAGASSRASSRAGASSRAGKGKKTK
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtcgaggtggttttggcgcgaaccggggcaagggtcccacccgcgtcagctggg
cccatggacatccgcaagtttttcgcaccgcaagctgcgaagctcgctgctagtggcaac
agcagcagcagcagcagcagtggcggtggcagccgagcggcggcaaaagtgaaaggcaaa
gctccgccggtggcaaaggcaacaaaggcgaccacgaaggcgaccacgaaggcagacacg
aaggcggtcacgaaggcggtcacgaagatggccacgaaagcagccagtgggaagaggcac
aaggaggagacgctgaagagccgcgtccgtggaaagaaagccgacaaaagtgatgacgac
gacagcgacgatgatgatgatgaagacgacataaagggtggcacaaaaaagcagaaggcc
agaaaaaagcgtggaatcatttcagactctgattcggatttggaggagattcccccgccg
aagaaaagccacagttctgcctcatccaccaccaagacctcagctgccaccaagacttcc
aagacttccaagacgagcaaagtggtgaccatctccgattctgatgaagacagttcctct
cctgacatgaagaagggcaaaacgaaaccggcatccggcaaagtcccaaacgggcacgcg
cggctacccaaatcgagccccaagaataagccgagcgagccgagggctcttccgcggtct
ccccgccgcggtgacaaaccccagccggcgcctgctgctgccacggcatcgcgccggcac
gtggaggagaagaagccgtcgccggtgaagctggtgcccacgtccgtatcggaatacttc
ggcacgacctccgtgcagcgctccaaccgcacgcttgtggctaagcgcaaagcaggatca
gacagcactgatgaatcgtttagccccagtgagccgacatctgcacaagaggatgtttcc
aagcagctggagaagcagctgcacgaggatgaggaatttgcgcgcacgctcgccatgttg
gatgaggaggaggtcgctccgcagcacaagaaggctcgtgtggagtcatttgctcgcagc
agcaagacgccagaaaaacaacctgcactgaggaagaggtcacccgtgaagccaaccaaa
gcggcggctccaccaccgttggtgaagttcgagccaaaagttgcacccaaaaggtcaccc
ttcaaagcggtacctctgtccacggtgaagttatctccggttaagagggaaatcgaccgt
tctccgagttcgaagggtgccgccatgggctctcctgccaggacgggcagcacggagacc
tcgcccaagtctgagaaaggcctggaagactctgagaagaaacgacagaatgtggctgca
tacagacactacctcagccgggatggtccgcgcgcactcgggtcaaaggagatcccacag
ggaggggagaactgcctggaggggctgacgttcgtgatcacgggcgtgctggagtcgctg
gagcgggaagaggctcgctcgctcgtcgagcgctacgggggcaaagtgacggggaacgtg
agcaagcgcaccgactacctggtggtcggccgcgaccccggcaattccaagctggacaag
gccgagagctgccgagtgaagcagttggacgaggatgggctgcttgagttgatccgcaca
cgtcccggaaagaagagcaagtacaccatcgccgccgagacggaggcttccaaggctaaa
ttcgccgccaagaagtttcctagccagccgacaaagttatctccggacaaactgaccaaa
acctcaccggagaaaccgaccaagacctcaccggacaagccaactagcacgtctccagac
aagcccacgaaggaggccggcggcaccgaccagacctcgaccgtgacccggaagcagctc
ttctctgctgccgagcagcagcggagaacagagcggacggagactggctgggctgggagg
gtgacgggcagaggaccctcggctgagaccaggagccccaagaagggcagtggccccgaa
gtgggaggggacagcctgctgtgggtagaccgctacaggccacagtccctgaagaacatc
atcgggcaacagggtgaccagagcccggccaacaaactactgcgctggctgcgcgcctgg
cacagcaaccacggaggcgcaagtggcggtggaaggaaggccgcccctagcgtaggaagg
ttcaggttcggcgggaaggatgatggctctggtttcaaggctgcgctgctgtcaggacct
cccggcgtaggcaaaaccacaacggccgccctcgtgtgccaggagctgggcttgagtttc
gtggagctaaatgcgagtgaccgtcgcagcaagaacagcatgaagaatgaggtctcgacc
tgcttgcgcaacaccagcattgaaggcttctaccacggcacggcacagacagtgagcgac
cgccacgtgctattgatggacgaggtggacggcatggctgggaacgaggatcgggggggc
atgcaggagctcattgcgctcatcaagcagagcaaagtgcccgtcatctgcatgtgcaac
gatcggaaccacgcaaagatccgctcgctcgcaaactactgcttcgacctccgcttccca
cgaccacgcgtcgagcagatcaagggagccatgatgtccgtggcattcaaggaaggcctc
aagatccctccggccgccatgcaggagatcatcctggcagcaaatcaggacatccggcag
gtgctgcacaacctgtgcgtgtggtcagcacgagagaaggccctcacatacgaccaggcc
aagtctgacgccaaaagtgccaagaaggaccttaaaatgggcccctttgacgtggcgcgc
aaggtgttcattgctgacgaggagacgcagcacatgtcgctcatggacaagtccgacctc
ttcttccacgactactccatcgcgccgctctttgtgcaagagaactacgtgcatgtccgg
ccgctggccgcagggggcaacatgaagaagcacctcaccctgctgagcaagactgccgac
agcattgctcagggggacctcgtcgacaggcagattcgctccaatcagtcgtggggcctc
ctgcccacacaggccatttttgcgagcgtcatcccgggagagctcatgaggggctacatg
tcgcagttccccagtttcccgagctggctcggtcgtcactccacaacgggcaagaacgcg
cggatcttgcaggagctgaccatgcacatgagcctccggacgcattcgtgccaacgcgcc
gtgaaccttgaatacctgggtgccctgcgcaacgagctggcgcggccgctgcagacgcgg
ggctcggagggcgtcgcgcagacactgagcctcatggatgactactgtctgaccaaggag
gacgtggacagcctcatggaagtgtcatcttaccacggcagcaccgaccctctcgccaaa
cttgaccctaaggtcaaggcggcgtttactcgggcctacaacaaagaatcgcacctcacg
ccgtactcgctggccgtgggccccaagaaggggcggcgaggccctggagggggtggatcg
aacgaggagggagaaggattcgacggagcagagggcgatggagctgcagctgtgccggat
tcggccagcgagcacgaggatgacatggacatttccgccgacgccatgattaagcaaaag
aagaagccagcgaaaaaagcatccaaggaaacaagctcccccagcaaggccggggcaagc
agcaaggccggggcgagtagcagggcgagtagcagggctggggcgagtagcagggccggg
aagggtaaaaagacaaagtag
DBGET
integrated database retrieval system
