Lethenteron reissneri (Far Eastern brook lamprey): 133342997
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Entry
133342997 CDS
T09663
Name
(RefSeq) protocadherin-9-like isoform X1
KO
K16498
protocadherin delta 1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
133342997
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lrj01009
]
133342997
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lrj04515
]
133342997
Protein phosphatases and associated proteins [BR:
lrj01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133342997
Cell adhesion molecules [BR:
lrj04515
]
Cadherins
Protocadherins
133342997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
133342997
NCBI-ProteinID:
XP_061408400
LinkDB
All DBs
Position
16:12664132..12726532
Genome browser
AA seq
1520 aa
AA seq
DB search
MLQLRFGKSTILPRWAGTESGDQQPVMASGCGAWAARPGWLPPPLLVPLLLLLLLSRLSS
AEEFKVSYRVAEELREGAFIGNPSVDLRLADYNLELTYKVMLSKAEDAAPPLVRVNPRTG
ELFAAGRKMDREALCGGQDPGDECHVDVQVGVLPVLPGPFFKLIEVRINVEDINDNAPAF
AAPVLTVSVPENAPAGKRFPIQPANDPDSEANGVRRYELLPSDPATVSTFELSVTETADG
EKVPYLVVRKSLDREERQLYEMNLRAVDGGSPPHSGSAVLRINVTDTNDNSPVFDQAEVN
VEIPENSPVGTHVVQLHASDRDAGSNAEVVYRLGTSTSGAGSGQGGKRLFRLDQNSGLVT
VNGLLNREESPVYRIIILATDKGPEPVPATATVTVTVTDVNDNSPTIEIRDIVAPVNGVI
YISEASHVNLPVALITVSDPDIGANGAVTCYIYNPEVPFQLKKLTYPNQYLLETRETLDY
ETKNEYVVQIKAADAGATSLSRTMSVTIKLLDSNDNAPVFTEPTYKVSVPENNVIGKHLI
TVSATDRDMDKNAEMVYFLGPDAPTMFHMDPETGIISLTEQLDREKKSNYSFTILAKDQG
IPVLEGNATVIVNVLDVNDNRPRFSLAEFDFYVNENVPKHSTVGMVTVADSDEGENGRVR
LSILGTDNRQLFSIDPESGMIRSNVGFDREQRHYYVLEVQATDGGEPVRSSTVKVVIHVM
DINDNSPIVLMPPSNTTYKFVVPRTLPGTIVTEVSAVDNDAEINAELRYHIVGGNPHNLF
HIDPVIGNITLMEPLTETHHGLHRLVVRVSDIGIAVQHHAVALVHVFVNETLENATYIEW
LIAGSLQTPLDTDVAGFGRREQEDNKVLLLAAVLAGVLGVALIVLLGVLVHRCYCNRRKG
GGGGIVRAKHGGQEWLSPTQEKKHSNGGKNNKKSDNRKKKKHANGAPFSIAIEASKNSED
PTYQTINEAMSWGHESDAPSPIYGLGGGGGGGDGVATTFKPGSSSGTVGGGGSGGGGGGG
GGSNGGGGGGSESPDLARHYRSTSPVTPVSLPQATQQTPTAGKKYGVIQELPVANTFVGS
GGSGVGGVGGAGNGACAGGGNGGNDCMSSKRSSISSEHYSHSETECSSQSGGNNSSGGGG
GGGGGCGGGGGGNNKGGGQRYNRQPQRRVKFTLDGECYGSSQQSCADSGLGDTSDGGPPL
GPAMAYRPGGITGAAMELGSGPAGSGGGAEHGPGLPGGGGGCCYYQLTPLTDEGHERSTP
DGSIGEIEHLEHGCTAPMLPKDLPDVTVIASRCTSDCQRYGHSDLCWMPPEPETALLLDK
SMPAAPTQHVPISRARLPAVNAVPLSAAAVASNPNAADLGTNARGVQHPAPPFSTFMGPT
RERASSRTPTPAVSPTSANTAPSVPAAAAAAAATGPSDEHAPQGNLWEDRNRNHLLLRQA
AYAAGLGGGPGIGMAAFRQLSDGDGGKEKESIPLTATGSSQPPPATPGSGGNSSSSSANP
ATKYKQATVSIAPYSREHYL
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atgctccagctgaggttcggaaagtcgacgatcctcccccgctgggccggaactgaaagc
ggcgaccagcagccggtcatggccagcgggtgcggggcgtgggcggcgcgccccggctgg
ctgccgccgccgctgctggtgccgctgctactgctgctgcttctgtccaggctgtcgagc
gccgaggagttcaaagtgagctaccgagtcgccgaggagctacgtgagggcgccttcata
ggcaacccgagcgtcgacctccgcctggcggactacaacctcgagctgacctacaaggtg
atgttgtccaaagccgaggacgcggcgcccccgctggtgcgggtgaacccgcgcacgggg
gagctcttcgccgcggggcgcaagatggacagggaggccctgtgcgggggtcaggacccc
ggcgacgagtgccacgtggacgtgcaggtgggcgtcttgcccgtgctgcccgggcccttc
ttcaagctcatcgaggtgcgcatcaacgtggaggacatcaacgacaacgcgccggccttc
gcggcgcccgtgctcacggtgtccgtgccggagaacgcgccggcggggaagcgtttcccg
atacagccggccaacgaccccgacagcgaggccaacggcgtgcgccgctacgagctgctg
cccagcgacccggcgacggtcagcaccttcgagctgagcgtcaccgagacggccgatggc
gagaaagtgccttacctggtggtgcgcaagagcctggaccgcgaggagcggcagctgtac
gagatgaatctgcgcgccgtggacgggggctcgccgccccactcgggctccgccgtgctg
cgcatcaacgtcaccgacaccaacgacaacagccccgtgttcgaccaggcggaggtgaac
gtggagatccccgagaactcgccggtggggacccacgtggtgcagctgcacgcctccgac
cgcgacgcgggctcgaacgccgaggtggtgtaccgcctcggcacgagcacaagcggagcc
gggtcgggccagggcggaaagcgcctcttccgcctcgaccagaacagcggactggtgacg
gtcaacgggctcctcaatcgcgaagagagccccgtttaccgcatcatcattctggccacc
gacaaagggcccgagcccgtgccagcgacagccaccgtgacggtgaccgtgaccgatgtg
aacgacaactcgcccaccatcgagataagggacatcgtcgcacccgtcaacggtgtgatc
tacatctcagaggcgtcgcacgtcaatctccctgtggcgcttatcacggtttcagaccca
gacattggtgccaatggtgcagtgacgtgctacatctacaatccggaagttccatttcag
ctcaaaaagttaacctacccaaaccagtaccttctggagacacgggagactctggattac
gagacaaagaacgagtacgtggtgcagataaaggcagccgacgcaggagcgacaagcctc
tctcggacaatgtcggtcacaataaaattgcttgacagcaatgataatgccccggtgttt
acagagccaacatacaaggtatccgtccctgaaaacaacgtgattggaaaacacctgatc
actgtcagcgccactgacagagacatggacaaaaatgcagagatggtttactttttggga
ccagatgcacccacgatgtttcacatggacccagaaacgggcatcatttctttgaccgag
cagctggacagggaaaaaaagtcgaattactctttcaccatcctggctaaggaccagggt
ataccagtgttggagggcaatgcgaccgtcatcgtgaatgtcctcgacgtgaacgacaac
aggcctcgattcagcctggccgagtttgacttctacgtgaacgagaatgtgcccaagcac
agcaccgtgggcatggtgacggtggccgactcggacgaaggggagaacggacgcgtccgc
ctctccatcctcggcacggacaatcggcagctcttcagcatcgacccggaatccggcatg
atccgctcaaacgtgggcttcgacagggagcagaggcactactacgtgctggaggtgcag
gcgacagacggaggggagcccgtgagatcctccacggtcaaggtggtcatacacgtcatg
gacatcaacgacaactcgcccatcgtgctcatgccgccttccaacaccacctacaagttc
gtcgtgccgcgcacgctgcccggcacgatcgtgaccgaggtttctgccgtcgacaacgac
gccgagatcaacgcggagctgcggtaccacatcgtcggcgggaacccgcacaatttgttc
cacatcgaccccgtgataggaaacatcacgctgatggagcccctgacggagacgcaccac
ggcctgcaccggctggtggtgcgcgtgagtgacatcgggatcgcggtgcagcatcacgcc
gtggccttggtgcacgtgtttgtcaacgagacgctggagaatgccacgtacatagagtgg
ctgattgccggcagcctgcaaacacctctggacacggacgtcgctggctttggcaggcgg
gagcaagaggacaataaggtgctgcttttggcagctgtgttggccggggtcctgggagtt
gccctcatagtgttactgggtgtcctggtgcaccgctgctattgcaaccggcgcaagggc
gggggtgggggcatcgtgagggccaagcacggtgggcaagagtggctctccccaacgcag
gagaaaaagcacagcaacggcggcaaaaataacaagaagtcggacaacaggaaaaaaaag
aagcacgcgaacggcgctccgttcagcatagcgatcgaagcgagcaaaaattctgaagac
ccaacgtatcagacgattaacgaggccatgagttgggggcacgagtccgatgcccccagc
cccatctacgggctcggtggcggaggaggcggtggcgacggggtggccacgaccttcaag
cccggctcgagcagcggcaccgttggtggcggcggcagtggaggaggaggagggggagga
ggagggagcaacggcggaggcggcggtgggtccgagagccccgacctggcgcggcactac
cgctcgacctcgcccgtcacgcccgtaagcctcccccaagccacgcagcagactcccacc
gcggggaaaaagtacggcgtcatccaggagctcccagtggccaacacgttcgtgggcagc
ggcggaagcggcgtcgggggcgtcggcggcgctgggaacggggcctgcgccggcggaggc
aacgggggaaacgactgcatgtcgtccaaacgctcgtccatcagctcggagcactacagc
cactcggagacggagtgcagctcgcagagcggtgggaacaacagcagcggcggtggcggt
ggcggcggtggcggctgcggcggtggcggaggtggcaacaacaaaggcgggggtcagcgc
tacaacagacagccccagcgccgtgtgaaattcaccctggacggggagtgctacggctcg
tcgcagcagagctgcgccgacagcggcctcggcgacacgtccgacggcgggcctccgctg
gggccagccatggcctaccggccgggcggcatcacgggagctgccatggagctcggctcg
ggtcccgcgggctccgggggaggggccgagcacggccccggtctcccggggggaggaggc
ggctgctgctactaccagctgacgccgctcacggacgaagggcacgagaggagcaccccg
gacggcagcatcggggagattgagcacctggagcacggctgcacagccccaatgcttccc
aaggacctgcctgatgtgactgtgatcgcgtcgcgttgcacgtccgactgccagcgctat
ggccactccgacttgtgctggatgcccccggagcccgagaccgctctactgctcgacaag
tccatgccagccgctcccacccagcacgtgcccatctcccgtgcccgcttgcccgccgtc
aacgccgtcccactgagcgcggccgccgtggcctccaaccctaacgccgccgaccttggc
accaacgcccgaggcgtccagcacccggcaccgccgttctccaccttcatgggtcccacg
cgagagcgggcctccagccgtacccccaccccggccgtgtcccccacctcggccaacacc
gctccatctgtcccagctgctgctgctgctgctgctgccactggcccgtccgatgagcac
gcgccacaggggaacctctgggaagaccgaaaccgaaaccacctgctactgcgacaggct
gcatacgccgcgggtctcgggggcggccctggcattggcatggcagccttcaggcagctt
tcagatggtgacggtgggaaagaaaaggagtccatccctctgacggccacggggtcttcc
cagcctcctccggccacaccgggcagtggtggcaacagcagcagcagcagcgccaacccg
gctaccaagtataagcaggccaccgtgtcaattgccccgtacagccgtgagcactacctg
taa
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