Lethenteron reissneri (Far Eastern brook lamprey): 133343012
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Entry
133343012 CDS
T09663
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03440
Homologous recombination
lrj03450
Non-homologous end-joining
lrj04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133343012
03450 Non-homologous end-joining
133343012
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
133343012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrj03032
]
133343012
03400 DNA repair and recombination proteins [BR:
lrj03400
]
133343012
DNA replication proteins [BR:
lrj03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
133343012
DNA repair and recombination proteins [BR:
lrj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
133343012
BRCA1-C complex
133343012
NHEJ (non-homologous end-joining)
MRX complex
133343012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
AAA_15
Rad50_zn_hook
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
COG6_N
Roc
AAA_24
Motif
Other DBs
NCBI-GeneID:
133343012
NCBI-ProteinID:
XP_061408420
LinkDB
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Position
16:complement(13277776..13301326)
Genome browser
AA seq
1334 aa
AA seq
DB search
MAKIDKMSILGVRSFGVSDCDKQVITFHTPLTILVGHNGAGKTTIIECLKYICTGDFPPG
TSGASFIHDPKVAHETDVKAQIRLQFMDVNGDMVTVQRLLHATQKAKKVEFKTLEGVFTR
LKNGEKYSISSKCTDMNREMITALGVSKAVLSNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALDSLSKVRKDQGSIVRELQAVVKLLQQNKNKAEELQRDLDDIVAKLEASRES
VFTIDREVSPLEINLKDVESKLAVVVRLDNEVKATQSRQAQMEVDSRDLQEKMEQVFQGT
DEQLQEAYSSHQRRVQEKERRLGERQRELERVNREVLRLRNVKGGLHVEQGKLQQEAERH
ASTVKRRDQLVQTLASELELDGYSSVPLSDRQVSSFTRLVRERMEQDDNNVKRLLHEFEE
KENEKQRQMDDARERKTAAESSVQLKRELLGDKQAELEEKRAELGRLQSSGDRLQVVESE
LRDTEHQLEVAEGSSQAEGLRTELQRMQRERTDFDSLLRRLDHEMSTLNLHTQARTQLDM
HNKEKVEKEEQIRRIRLRHDKTLVTFVGHFPSKGELEMWLDRRAQERRQLQAKIQGLNKL
LASAEQNKSHLTTELRRKEERLKENEEQLFELCGGRDLESELLALQDQIERTNKQRAMLA
GASAVYTQFISQLTEESGPDDLEGMGAAAGGGGGGAGQGSPCCPVCQRAFQSESDLAEVV
NDLQAKLRLVPDKLRATETELTRKQKRRDNMIQLKPMQQRVVETSEKELPELRNRLSSLN
QEIQRLKNSLDEEETLQATLESEEDAVKSCQQDVALMDRFQSDLRELERKVAQQMARLAG
VDVERTLQVVGDEKQDVQRKLDNVNNALELKRLALETDVERINELRSRVNSVREERLRLA
TGMQRIEALRSLTAELEAETSDLKRQIQEAQEQVLPLEGTLRKLQQEKAEIVARKTREHN
QAARRISDLQDKNKNIIAFMKEVDTYINSGRDQLKKNKELEMQEVARELSGEEENQVQIG
RDISGIRQEIDTQKVRERCLQDNLTLRRRQQELASVGDSITRLLEKMGSMNVMQLKTEQE
RLISHLEELKSKRSRALGRQQGLQDTKYKFEGQLKDKQFRDAAKEYMDNIIVMKTSELAC
KDLDVYYKALDQAIMKFHSMKMQEINKIIRDLWRNTYRSQDIEYIEIRSDADESASASDK
RRNYNYRVVMVKGDTPLDMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLD
RENIESLAHALVEIIKSRSRQRNFQLLVITHDEDFVELLGRSEYVDHFYRVRKNNEQCSE
IVKCSVSTLQASVA
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaatagacaagatgagcatcttgggggtacggagctttggcgtcagtgactgc
gacaagcaagtgatcactttccacacgccgctcaccatcctggtgggtcacaacggcgct
ggcaagacgacgataattgagtgcttgaaatacatctgcactggtgacttcccaccgggc
acaagcggcgcttcctttattcacgacccaaaggtggcccacgagactgatgtgaaagcg
caaattcgattgcagttcatggatgtgaacggcgacatggtaaccgtgcagcgattgctg
catgccacacagaaggccaagaaagtggaattcaagaccttggagggggttttcacccgg
ctgaaaaatggagaaaagtacagcatcagctcaaagtgcaccgacatgaatcgcgagatg
atcactgcccttggggtctccaaggccgtcctgtcaaacgtcatattctgccaccaggag
gactctaactggccgctcagcgagggaaaggctctcaagcaaaaattcgatgaaatattt
tctgcaaccaggtatatcaaagcactggactcgctgagcaaggtgcgtaaggaccagggc
tccatcgtgcgagagctgcaggccgtcgtgaagctgctgcagcagaacaagaacaaggcg
gaggagctgcagcgggatcttgatgacattgtcgcgaaactggaggcctcccgagagagc
gtgttcaccatcgaccgggaagtcagcccgctcgagataaacttgaaggacgtcgagagt
aagctagcagtggtggtgagattggacaacgaagtgaaggccacgcagagccgccaagct
cagatggaggtggacagtcgagacctgcaggagaagatggaacaggtgtttcaaggcacg
gacgagcagctgcaggaagcttacagcagccaccagcgcagggtgcaggagaaggagcgt
cggcttggggagcggcagcgcgagctggaacgcgtcaacagggaggtgctccgtctgcgc
aacgtcaagggggggctgcacgtggagcaaggaaaactacagcaagaggccgagaggcac
gcgtccactgtgaagcgtcgagaccagctggtccagaccctcgcgtcagagctcgagctt
gacgggtacagcagcgtcccgctgtccgaccggcaggtgtccagcttcacgaggctcgtc
cgagagaggatggagcaagacgacaacaacgtgaagcgcctgctgcacgagtttgaggag
aaggaaaacgagaagcagcgtcagatggacgatgccagggagcgcaagacggcggccgag
agctcggtgcagctgaagcgggagctgctgggcgacaagcaagccgagctggaggagaag
cgcgccgagctgggtcggctgcagagctccggggaccggctgcaggtcgtcgagagcgag
ctaagggacactgagcaccagctggaggtggcggagggctcgtcgcaggcggaggggctc
cgcacggagctgcagcggatgcagcgcgagcgcacggatttcgacagccttctccgccgc
ctcgaccacgagatgtccacgctgaacctgcacacgcaggcccgcacgcagctcgacatg
cacaacaaggagaaggtggagaaggaggagcagatccggcgtatccgtttgcggcacgac
aaaacgctggtgacgttcgtgggacactttcccagcaagggagagctggagatgtggctg
gaccgtcgtgcccaggagaggcgacagctgcaggccaagatccaaggtctcaacaagctg
ctggcatcggcggaacagaacaagtcccacctgaccacggagctccgtcgcaaggaggag
cgactcaaggagaacgaggagcagctgtttgagctgtgcgggggccgtgacctcgagagt
gagctgttggcgctgcaggaccagattgagcgcaccaacaagcagcgagcgatgctcgcc
ggtgcctcggccgtgtacacccagttcatcagccagctcacggaggagtctggacccgac
gacttggagggtatgggggcggcggcaggcggcggcggtggcggcgctggtcaggggtcg
ccgtgctgccccgtgtgccagcgcgcgttccagtccgagtcggaccttgccgaagtggtg
aatgacctgcaagccaagctgcggctggtgcccgacaagctgcgggccaccgagaccgag
ctgactcgcaagcagaagcgacgtgacaacatgatccagctcaagcccatgcagcagagg
gtggtggaaacgagcgagaaggagctcccagagctgcgcaaccgtctatcgagcctcaac
caggagatccagcggctgaagaacagtctggacgaggaggagacgctgcaggccacgctc
gagtccgaggaggacgccgtcaagagctgccagcaggacgtggcactcatggaccgcttc
cagagcgacctcagggagctggagaggaaggtggcgcagcagatggcgcggttggcgggc
gtggatgtggagcgcacgctgcaggtggtcggggacgagaagcaggatgttcaacgcaag
ctcgacaacgtgaacaacgctttggagctgaagcgattggcgctcgagacggacgtggaa
cgcatcaacgagcttcggtcgagggtcaactccgtgcgggaggagaggctccggctggcg
accggcatgcagcgcatcgaggcgctgcgatccctcactgccgagctggaggccgaaacg
agcgacctcaagaggcagatccaggaggcacaggagcaggtgctgccactggaaggaaca
ctgaggaagcttcagcaggaaaaggcagaaatcgtagcgaggaaaactcgcgagcacaac
caggcagcacgccggatatctgatttgcaagataaaaacaagaacataatagcattcatg
aaagaagtggacacgtacattaattctggacgagaccagcttaaaaagaacaaggagctg
gagatgcaggaggtggcgagggagctgagtggcgaggaagagaatcaagtgcagatcggc
cgtgacatcagcggcatccggcaggaaattgacacgcagaaggtacgcgagcgctgcctg
caggacaacctgaccctgcggcgacgccagcaagagctggcgagcgtgggcgacagcatt
actcgcctgctggagaagatgggcagcatgaacgtcatgcagctgaaaacagagcaggag
cggctgatcagtcacctggaggagttgaaaagcaagcggagtcgcgccctgggaaggcag
cagggtcttcaggacacgaagtacaaattcgaagggcagctcaaggacaagcagtttcga
gatgctgccaaggagtacatggacaacataatcgtcatgaaaacgagcgagcttgcctgc
aaagacctggatgtttactacaaggctctggaccaggctatcatgaaatttcatagcatg
aagatgcaagagatcaacaagattatccgtgacctgtggaggaacacttacaggagtcaa
gacatcgagtacatcgagatccgatcggacgccgatgagagcgcgtcggcctccgacaag
cggcgcaactacaactaccgcgtggtgatggtgaaaggggacacgcctttggacatgcga
ggccgctgcagtgctggccaaaaggtgctggcgtcgctgattatccggctggcgttggca
gagacgttttgtctgaactgcggcattttggccttggacgaaccgaccaccaacttggac
cgagagaacatagaaagcttggcacatgcactcgtcgagatcataaagagccgctcgcga
cagcggaacttccagctgctggtgatcactcacgatgaggactttgtggagctgctgggc
cgctccgagtacgtggaccacttctaccgagtgcgcaagaacaacgagcagtgctccgaa
atcgtcaagtgcagcgtcagcaccctgcaggcatccgtagcgtag
DBGET
integrated database retrieval system
