Lethenteron reissneri (Far Eastern brook lamprey): 133343795
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Entry
133343795 CDS
T09663
Symbol
TAF1C
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrj03021
]
133343795 (TAF1C)
Transcription machinery [BR:
lrj03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
133343795 (TAF1C)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
133343795
NCBI-ProteinID:
XP_061409611
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All DBs
Position
18:7510408..7527205
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AA seq
1124 aa
AA seq
DB search
MERPRGGCDLTAFPSSLFPTHYSTGPAADHRLTPGTWSLLGPVQRQENPADEARSTARPL
DEVIQGQQPRWVSQRRHGVEWEPVEPVALPFLPLSEVCTIPDFEDERIEEMMGPGKREAY
HAKSYKFIEQMSNFFMDHPRDAFLSMGKLLEPYFNFSNTTPKAGEQVTAGRMLSYRKEKK
REKIAHLLGDALWEVPHHVLADCLREELRERRARERFDAACTGGCLHYHPPLGARTHGLL
IYPSGSCMDTLSFQTIAQKCEGKACRSSCIKTLKPSVKFHLAGGIRQISTSSIRQEVFVG
VRSDYFCGLWKTGGEHPLRPQCVEVVQLEEPATCLTVSPHIPGELLVASESGSVYLWVAQ
KSSLQCVRRETRNLHFDAESRWRWCHFTAHPRVITYADRTGVDATDARIGRAGNTSLFRI
GEAAGCQQGERVVLSQHLDPVNPFHFLVTTQYSAYLMDERLPILPMLRWNHGLTYPPLFV
HATHGPGGGISSSAASGGQRQHLLLGTQRKHELLMLSYTGGGQEPCCTTSLPRKLACASE
WLGHVRPLLPHQKHLLRRRLESAGAGVTAIPHQGSCGRLTVLQLSVAGDIFYQTLRPGAP
GTANAVDCATEPPSATHDAAPPDPAMLAAPRRVIPPPSGGTKALDSRGDGSGSAVADSET
GGGGGEVASNGSADLLRSEVKRCQRWASSFLLLQRRAAGKLPPYRARRQQGRLFRHLHRR
MPEKPSDFSSIVVGLVRAKLRAGVATGAEVAVTAGRGSTEEERSEEVQAQPSLQLLLPVL
SLTQEEEPVLFPKPVADAEAKDELSSRLTAAWHGEWHEWWEEKLGIASKRRARDARQRRR
EKKLRGRRHRRLQGSYSSTASEWATEFSETMSCSGKSFTSVDLFSQSSHPDEVELDLDIL
QGHYTDDTRASAAMGIDSSQHSLFEDDAHVAASSSRPSLLGASSQNLPSSILKKNPSKTT
QQSLAETAVQDKVELWTNTFFGESLSQMSQSSTPFFSRARRPAQASDLQRQSPKPLSPSL
SSLQKEPSSSQHLGPAQGNGLQREEEPSSGVDGRSQEADAAVSRPASSMLLPFGFSSQPS
GGSPMPWIVTSNSQGSSSTPLPQRPSSQSAASLLKKKKRFTMGF
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atggagaggcctcgggggggctgcgatttgacggcattcccatcgagcctcttccccacc
cactacagcacggggcccgcggcggaccaccgcctcacgcccggcacctggtccctgctg
gggcccgtgcagaggcaggagaaccctgcggacgaagcgcgctccacggcacggccctta
gacgaggtgatacagggccagcagccgagatgggtctctcagagacgccacggagtcgag
tgggaacccgtagagccagtggcgttgccgttcctgcctctgagtgaagtgtgcacgatc
ccagacttcgaggatgagcggattgaggaaatgatgggcccaggaaagagagaggcctac
catgctaaatcgtacaagttcatcgagcagatgagcaactttttcatggatcatccccgt
gatgcgttcctgtccatgggaaagctcctggagccctatttcaacttcagcaataccacg
cccaaggctggagagcaggtgactgctggacgcatgttgagctacaggaaggagaagaag
cgggagaagatcgctcacctcctgggcgacgcgctctgggaggtgccccaccacgtcctg
gctgactgcctccgcgaggagcttcgggagcgccgggcacgggagcgtttcgatgcagcg
tgcacgggcggttgcctccactaccacccgccgttgggggctcgcacgcacgggctcctc
atttacccatcgggcagctgcatggacaccctctcatttcagacgattgcgcagaagtgc
gaggggaaagcatgtcgatcgtcttgcatcaagacgctaaaaccgtccgtgaagttccat
ctcgcaggaggcattcgtcagatcagtaccagttctattcgacaagaagtttttgttggt
gttcggtcggattacttctgcgggctctggaagaccggtggcgagcatcccttgcggccg
cagtgcgtcgaggtggtgcagctggaggaacccgcaacatgtttgaccgtcagcccccac
atccccggcgagctgctggttgccagcgaaagtggcagcgtctacctctgggtcgcgcaa
aaaagcagcctgcagtgcgtgcggagggagaccaggaacctgcattttgatgccgaatct
cggtggcgctggtgccacttcaccgctcacccgcgcgtcatcacgtacgccgaccgcacg
ggcgtggatgccactgacgccaggatcggtcgagcgggaaacacatcgctcttccggatc
ggcgaggcggccggatgccagcagggagaacgagttgtgctcagccagcacctggacccg
gttaaccctttccacttcttggtgacgacgcagtactcggcgtacctcatggacgagcgg
ctgcccattctgcccatgctgcgctggaaccacggcctcacctatcctcccctgttcgtg
cacgccacgcatgggcccggcggcggcatcagcagcagcgccgcctccgggggtcagcgc
caacacctgctcctgggcacgcagaggaagcacgagctgctgatgctgtcgtacacgggt
ggtggtcaagagccgtgctgcaccacctcgctgcctcgcaagctggcgtgtgcaagcgag
tggctgggtcacgtccgaccactgctgcctcatcagaagcacctgctgcggcgcagactg
gaatccgcaggcgcaggggtgacggccattccacaccagggcagctgtggccgcctcacg
gtgctgcagctctccgtagccggcgacattttctaccaaacgctgcggcctggcgcccct
ggaaccgcgaatgctgtcgactgcgcgaccgagccgccctccgcgacccacgatgccgcc
ccacctgacccagcgatgctggccgcgcctcgcagggtgattccgccaccgagcggcggc
acgaaggcgctcgattcgaggggcgacgggagtggctcagcggtcgcggacagtgagaca
ggaggaggaggaggagaagttgcctctaatggaagtgcggatcttctcagatcagaagtg
aagcgctgccagcggtgggcttccagcttcctgttgctgcagcggcgggcggcaggcaaa
ttgccgccgtaccgagccagacgccaacaaggcaggctcttccgtcacctgcatcgccgg
atgcccgagaagccgtctgactttagcagcatcgtcgtcggcctggtgcgagccaagctg
cgagccggagtggcgacgggcgcggaggtcgctgtcacggcgggcaggggcagcaccgag
gaggagaggagcgaggaggtgcaggcgcagccttcgctgcagctgctgctgcctgtgctg
tcactgacacaggaagaggaaccggtattatttcccaagcccgtggcggacgcggaggcg
aaggacgagctgagcagccgcctgacggcagcatggcacggtgagtggcacgagtggtgg
gaggagaagctgggcatagcgtccaagaggagggcgcgggacgctcgacagcgccggagg
gagaaaaagttgcgcggccgacgccaccgacgcctccagggcagctactcgtccaccgca
tccgaatgggcgaccgaattctctgagaccatgagctgctctgggaagagctttacttca
gttgaccttttctctcagtcatcccacccggatgaggtagaattggatcttgacatcttg
caaggtcattacacagatgacacccgagcctcagctgcaatgggtatcgactcttcgcaa
cactctctctttgaggatgacgcacatgtagctgcctccagctcaagaccctccttgttg
ggggcatcgagccaaaaccttcccagctccatcttgaagaaaaacccttccaagacgaca
cagcaatcgctcgcagagacagcagtgcaggacaaagtagaactgtggacgaacacgttc
tttggcgagagcctgtcgcagatgtcccagtcatccacacccttcttctcccgtgccagg
cggccggctcaagcctctgacctgcagaggcagtccccaaagccgttgtcgccttcgctc
agttccctccagaaagagccctcctcgtcccagcacctcggaccagcgcagggcaacggc
ctgcagcgggaggaagagccctcgagtggcgtggacggccgatcccaggaggctgatgcc
gctgtctcgcggccggccagcagcatgctactgccgtttggcttctcgtcccagccgtca
ggaggctcccccatgccgtggatcgtcacctccaacagccagggcagctcctcgacgccg
ctgccacagaggccgtcctcgcagtcggcggcctccctgctcaagaagaagaagaggttc
actatgggcttctga
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