Lethenteron reissneri (Far Eastern brook lamprey): 133343862
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Entry
133343862 CDS
T09663
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03013
Nucleocytoplasmic transport
lrj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133343862 (UPF1)
03015 mRNA surveillance pathway
133343862 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133343862 (UPF1)
Enzymes [BR:
lrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133343862 (UPF1)
5.6.2.5 RNA 5'-3' helicase
133343862 (UPF1)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133343862 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
133343862 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
Helicase_RecD
UvrD-helicase
ATPase
AAA_16
SRP54
AAA_22
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
133343862
NCBI-ProteinID:
XP_061409775
LinkDB
All DBs
Position
18:complement(11140632..11172425)
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AA seq
1103 aa
AA seq
DB search
MSVDAYGPSSQSLTFLDTEEGELIGADTQATDFDYTDFTLPSQSQGGPSQGGQLDAPPHG
QLNGPDGALANGMDEAVAKATQSLAELNFEEDEEDAYYSKDLPSHACSYCGIHDPNCVVY
CNSSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGALGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCASQSSLKDMNWDATQWQPLIQDRCFLPWLVKIPSEQEQLRARQ
ITAQQINKLEELWKENPNATLEDLEKPGVDEEPQPVLLRYEDAYQYQNVFGPLVKLEADY
DKKLKESQTQDNITVRWDVGLNKKRIAFFSLPKTDSADMRLMQGDEICLRYKGELAAPWK
GIGHVIKVPDNFGDEIAIELRSNTGVPAECTHNFQVDFVWKSTSFDRMQSALKTFAVDET
SVSGYIYHKLLGHEVEDVLIKCMLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPG
TGKTVTSATIVYHLAKQNSGPVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIDSP
VSFLALHNQIRNMDSLPELQKLQQLKDETGELSSADEKRYRALKRNAERELLMNADVICC
TCVGAGDPRLAKMQYRSILIDESTQATEPECMVPTVLGAKQLILVGDHCQLGPVVMCKKA
AKAGLCQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAERVKKGF
DFTWTQPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITP
YEGQRSYLVQYMQFSGSLHAKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLND
PRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSK
PRKLVNTVNPGGRFMSTAMYDAREAMIPGSVYDRSGPGRAPHNSYFQTHDQMGMIGPNPG
HPAAFNLPIPFNMMMPPMPPPAYYGQMNGPPMGRGMGRGKPGKGKQQRPRGTGRSTGNGL
VDSQASQDVGSQPFSQGPLTQGFMSMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVAL
SQDSTYQGERAYQHSGMAGLSQY
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacgcgtacgggccgagctcgcagagcctcacgttcctcgacacggaagag
ggcgaactcatcggcgcggacacgcaggccaccgacttcgactacacggacttcacgctg
ccctcgcagagccagggaggtcccagccagggcgggcagctcgacgcgccgccgcacgga
cagttgaatggaccagatggggccctcgcgaatgggatggatgaggcagtggcaaaagct
actcagtctctggccgagctcaactttgaagaagacgaggaagatgcttattactcaaag
gacctcccatcgcatgcctgcagttactgcggaattcacgatcccaattgcgtggtgtat
tgtaattccagcaaaaagtggttttgcaacggccgtgggaacacatccggaagccacatc
gtgaaccatcttgtgcgtgccaagtgcaaggaggtaacactgcacaaggacggggcactt
ggtgagactgtgctggagtgctacaattgtggctgccgcaacgttttcctgctgggtttc
atccctgccaaggctgactctgtcgtggtgctgctgtgccggcaaccatgcgccagccaa
agcagcctgaaggacatgaactgggatgcaacgcagtggcagccactcatccaggaccgt
tgttttctgccctggctcgtgaagatcccttcggagcaggagcaactcagggcacggcag
attacggcccagcagatcaacaagctggaggagctgtggaaggaaaaccccaatgccacc
ttggaggacctggagaagccaggcgtggatgaggagcctcagcctgtgttactacgctat
gaggatgcctaccagtatcagaatgtgtttgggccacttgtcaagctggaggccgactat
gataagaagctcaaggaatcccagactcaagataacataaccgtgagatgggatgtgggg
ctgaacaagaagaggattgccttcttcagcttgcccaaaactgactcagcagacatgcgg
ttgatgcaaggggacgagatctgcttgcgctacaagggagagctggctgctccctggaaa
gggattggccatgtcatcaaagtcccggacaactttggagatgaaattgcaattgagttg
cgcagtaacactggcgtgccagcagagtgcacccacaacttccaggttgattttgtgtgg
aagtcaacctcctttgacaggatgcagagcgccctgaagacctttgcggtggacgagacc
tcggtgtctggatacatctaccacaagctgctgggccatgaggtggaggatgtactcatc
aagtgcatgctgcctaagcgcttcactgccccaggcctgcctgacctcaaccactctcag
gtgtacgctgtgaagactgtgctgcagcgtccactcagcctcatacagggtccccctggc
actgggaagaccgtcacctctgccaccatcgtttaccacttggccaagcagaacagcggg
cccgtgctggtgtgcgcccccagtaacatcgcagtggaccagctgacggagaagatccac
cgcacgggtctcaaggtggtgcggttgtgtgccaagagcagggaagccatcgactccccc
gtctccttcctcgctctgcacaaccaaatacgcaatatggacagcttgccggagctgcag
aagctgcagcagctaaaggatgagaccggagagctgtcttccgccgatgagaaacggtac
cgagccctcaagaggaatgcggagcgtgagctgctgatgaatgcagacgtgatatgctgc
acttgcgtgggagccggtgaccctcgtttggccaagatgcagtaccgctccattttgatt
gacgagagcacccaggccacggagcccgagtgcatggtgcccactgtcctcggtgcaaag
cagctgattctggtgggcgaccactgccagctgggccccgtggttatgtgcaagaaggca
gccaaggctggactatgtcagtcgttgtttgagcggttggtggtgctgggcatccggccc
atccgcctgcaagtgcagtaccgcatgcacccagcgctgagtgccttcccttccaacatc
ttctacgaaggctcgcttcagaacggcgtcactgctgcggagcgtgtcaagaaaggcttt
gacttcacgtggactcagcctgacaagccaatgttcttctatgtgacccaaggccaggag
gagatagcaagctctggcacctcttatctcaacaggacggaggcctcgaacgtggagaag
atcacaacacgcctcctgaaggctggagccaagccagaccagatcggtatcatcacgccc
tatgagggtcagcgctcgtacctggtgcagtacatgcagttcagcggctccctgcatgcc
aagctctaccaggaggtggagattgccagcgtggatgccttccagggtcgcgagaaggac
ttcatcatcctgtcatgcgttcgtgccaacgagcaccagggcatcggcttcctcaacgat
cctcgtcgactcaatgtggccctcacgcgagccaagtatggtgtcattattgtgggcaac
ccaaaggctttatccaagcagcctctgtggaaccatctgctcaactactacaaggagcag
aaggtgcttgtcgaaggacctctgaacaacctgcgcgagagcctcatgcagttcagcaag
cctcgcaagcttgtcaacaccgtcaaccccggcggtcgattcatgagcacggcgatgtat
gatgcaagagaggccatgattccgggcagcgtgtacgaccggagcggaccgggtcgagct
ccacacaacagttactttcagactcacgaccagatgggaatgattgggcccaatccagga
catccagctgcctttaacttgcctatccctttcaacatgatgatgccaccgatgcctccg
ccagcctattatggccagatgaacggacctccaatgggccgcgggatgggccgtggcaag
ccaggcaagggcaaacagcaacgcccgcgcggaacgggacggagcacgggcaacggcctc
gtggacagccaggccagccaggacgtgggctcgcagcccttctcgcagggccctctcacg
cagggcttcatgtccatgagtcagccctcgcagatgagtcagccgggcctctcccagccc
gaactctcacaggacagttacctcggggatgagttcaagtcgcagatggatgtggcgctg
tctcaggactcgacgtaccaaggcgagcgcgcctatcagcacagcggcatggcggggctg
tcgcagtactag
DBGET
integrated database retrieval system
