Lethenteron reissneri (Far Eastern brook lamprey): 133343922
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Entry
133343922 CDS
T09663
Symbol
NCBP1
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03013
Nucleocytoplasmic transport
lrj03015
mRNA surveillance pathway
lrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133343922 (NCBP1)
09122 Translation
03013 Nucleocytoplasmic transport
133343922 (NCBP1)
03015 mRNA surveillance pathway
133343922 (NCBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133343922 (NCBP1)
03041 Spliceosome [BR:
lrj03041
]
133343922 (NCBP1)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
133343922 (NCBP1)
Spliceosome [BR:
lrj03041
]
Common components
Common spliceosomal components
Cap binding complex
133343922 (NCBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
Vps39_1
DUF1664
AAA_13
DUF3195
DUF5954
DUF2524
FUSC
DUF1690
His_Phos_1
ApoLp-III
FapA
OmpH
ISG65-75
Motif
Other DBs
NCBI-GeneID:
133343922
NCBI-ProteinID:
XP_061409919
LinkDB
All DBs
Position
18:complement(15323469..15361984)
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AA seq
791 aa
AA seq
DB search
MSRRRKIDDDDDDGASQHKRRRTSEPMKIEDRLESLICRVGEKSTSSLESNLEGLAGVLE
ADLPNYKSKILRILTAVARLLPEKLTIYTTLSGLLNARNYNFGGELVESLMRQLKEALKG
NFYTDSLYIVRFLADLVNCHVIAAPSLVAMFENFVAVTQEEEIPQVRSDWYVYAVLSSLP
WVGKELYEKKDVEMERILTQIEAYIKKRKKLHMPMLQVWTSDKPHPQEEYLDCLWAQTQK
MRSDRWQERHLLRPYLAFDSVLCEALQHNLPPFTPPPHSQDSVYPKPHVIFRLFDYTDAP
EGPVMPGSHAMERFVIEENLRCIIKTHWRERKTCAVQLVSYLGRTKIPLNYMVIEVIFGE
LFQLPCPPCIEVMYTALLIELCKLQPSSLPQVLAQTAEMLYMRLENMNTTCIDRFINWFS
HHLSNFQFRWSWEDWADCLTLDQGGPKPKFVREVLEKCLRLSYFQRIVDNTPESFAALLP
ANPGCIYKYADESNSSLPEYQMAGVLVEAFKSKKSHDEILNILKDVPNPNQEEDDEEGSF
NPLKTELFVQSLLSLASKSFSHSFSALAKFHEIFKLLADTDEGKVHILKSMYDVWRNHPQ
MMSVLVDKMIRMRIVDCAAVANWVFSADMAQEFTRLYVWEIIHSTVRKMNKHVQKVQREL
EEARDKLDRHLNRIDSDDEDERPEDASSLEEAVERLQEKLEMAQSEQKNLFLVIFQRFIM
ILTEHLVRCETSGTERRTPWYKNCIERLQQIFLQHQHTIQLYMGTLENLLFTSELDPHIL
AIFQQFCALTA
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcaggcgcaagatcgacgacgacgatgacgacggagcgagccagcacaagcgg
agacgcacctccgagcccatgaagatcgaggaccgcctcgagtcgctcatctgccgcgtc
ggggagaagagcacctcctctctggagagcaacctggagggcctcgcgggcgtgctggag
gccgacctgcccaactacaagagcaaaatcctgcgcatcctcaccgctgtagctcgcctg
ctgccagagaagctgaccatctacaccaccctgtcgggcctcctcaacgctcgcaactac
aactttggcggggagctggttgagagcctgatgcggcagctgaaggaggcgctgaaggga
aacttctacacggattctctctacatcgtgcgcttcctggccgacctggtgaactgccac
gtgatcgcggcgccgtccctcgtcgccatgtttgagaacttcgtggcggtcacgcaggag
gaggaaatcccccaggtgcgctccgactggtacgtgtacgccgtgctgtcctcgctgccc
tgggtgggaaaagagctctacgagaagaaagacgtggagatggagcgcatcctcacccag
atagaggcctacatcaagaagaggaagaagctgcacatgcccatgctgcaggtgtggacg
tcggataagcctcacccccaggaggagtacctggactgcctgtgggcccagacgcagaag
atgcgcagcgaccgctggcaggagcgccacctgctgcggccgtacctggcgttcgacagc
gtgctgtgcgaggcgctgcagcacaacctgcctcccttcactccgccgccgcacagccag
gactccgtctaccccaagccgcacgtcatcttccgcctcttcgactacacggatgctccc
gagggccccgtgatgccgggcagccacgccatggagcgcttcgtgatcgaggagaacctc
cgctgcatcatcaagacgcactggagggagcgcaagacgtgtgcagtccagctggtcagc
taccttggaaggaccaaaatcccgctcaactacatggtcatcgaggtgatcttcggggag
ctgttccagctgccgtgcccgccgtgcatcgaggtgatgtacaccgccctgctcatcgag
ctctgtaagctgcagcccagctcactgccgcaagttctggcacaaacagcagagatgctc
tacatgcggctggagaacatgaacaccacctgcatcgacagattcatcaactggttctct
caccacctgagcaattttcaattccgttggagctgggaagactgggccgattgcctgact
ctcgaccagggaggaccgaagcccaagtttgtccgggaagttctcgaaaagtgtctcagg
ctttcctacttccagcgcattgtggacaatactcccgagagctttgccgctctgctgcct
gccaaccccgggtgcatctacaagtatgcggatgagtccaatagctccctgcccgagtac
cagatggccggcgtcctggtggaggccttcaagagcaagaagtcccacgatgagatcctg
aacatcctcaaggatgtgcccaaccccaaccaggaggaggatgacgaagagggctccttc
aaccccctcaagacggagctcttcgtgcagagcctcttgtccctggcgtccaagtcgttc
agtcattccttcagcgcacttgccaagtttcacgaaattttcaagcttctcgccgacacg
gatgaagggaaagtccacattctgaagtccatgtatgatgtgtggaggaaccatccacag
atgatgtcggtgctggtggacaagatgattcgcatgcgcatcgtcgattgtgccgccgtc
gccaactgggtgttctcggccgacatggcgcaggagttcaccaggctctacgtctgggag
atcatccattcgacggtgcggaagatgaacaagcacgtgcagaaggtgcagcgcgagttg
gaggaggcccgcgataaactcgaccgccaccttaaccggatcgacagcgacgatgaggac
gagcggccggaagacgcctcctcgctggaggaggctgtggagcggctgcaggagaagctc
gagatggctcaaagcgagcagaagaatctcttcctcgtcatattccagcggttcatcatg
atcctcacggagcacctggtgcgctgcgagaccagcggcacggagcgcaggacgccctgg
tacaagaactgcatcgagcgcctccagcagatcttcctccagcaccagcacacgatccag
ctgtacatggggaccctggagaacctgctgttcacgagcgagctggatccgcacatcctg
gccatcttccagcagttctgcgccctcacggcgtga
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