Lethenteron reissneri (Far Eastern brook lamprey): 133344661
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Entry
133344661 CDS
T09663
Name
(RefSeq) sodium channel protein type 1 subunit alpha-like isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lrj04040
]
133344661
Ion channels [BR:
lrj04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
133344661
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
IQ_SCN5A_C
GPHH
Lustrin_cystein
IQ
SieB
Motif
Other DBs
NCBI-GeneID:
133344661
NCBI-ProteinID:
XP_061410681
LinkDB
All DBs
Position
20:6823841..6900729
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AA seq
1897 aa
AA seq
DB search
MSCMVGIPQSSGFFRHFTKESVARIEEQIAWEKERKADKDSTVVIEKVKPLNFLEADRTM
PFVYGEVPPKMISEPLEDLDPYYRNKMTFLVLNKGKTIFRFNACKALCLFTVFNPIRRIS
IKILTHSLFTILIMATILTNCVFMAINTELKVVEYVFTAIYMFEALVKILARGFFFGAFT
YLRDPWNWLDLAVLVIACFTSIPGFANLSALRMFRVMRALKTISVVPGLKTIVRALIQSV
KKLSDVTILTLFCLSIFALIALQLFKGNLKNKCVRWPIPGNFNFINISEYLEDKENYYFH
KNVPLLCSNSSENNTCPDGYTCLKAGKNPNYGYTNYDNFGWAFLSLFRLMTQDYWENLYQ
LTLRASGKVYMIFFVMVIFLGSFYLINLILAVVAKSYEEQNLATQQEAERKKDELQEMLE
QLKIQKEDQVAMATGQSRRPSYCRSRMASDQSHGSDTGSVTGVLAVPRALERRGTLLPEA
SENGNDLSQQLGRKVYVLHPDDRQECDNAGSLLSIVMSATPQRVSMGSVFRGSDDLMLNG
RQINREGDTGSCQEVPYQPWLERMPLGSRNSQSSEGGKTMDHLGFEGTMRMRSDSFQISA
DFLDDPISRERAMSAISAIEEEEKKTKCPPCWDRFVNKFLIWTCCPFWMRVKRLAKIVVM
DPFFDLFITLCIIINTVFMAMEHYPMKPEFQTMLDTGNKLFTAIFAAEMVLKLVALDPFY
YFQQKWNIFDSCIVTLSFVELGLTGVDGLSVLRSFRLLRVFKLAKSWPTMNALIKIIGNS
VGALGNLTVILVIVIFIFAVVGVQLFAKHYDENKAMQIIPNECPLRWHMRDFFHSFLIVF
RILCGEWIENMWICMELAGQPLCIVVFMMVLIFGNLVVLNLFLALLLSSFCAENFTAADD
DTEATNMKIALGRIRNGIAYVASSIRRFVCKVLRCGKVPDSRQKIDIVKLEQMKNVSVGF
AGTNGANHVHKVVSNGSVSSMAVPVAMPELESDIPDHGSTLTGYSTQSLGSSLVDEAMEV
EVTDGVLASEDEKTKQQEEEEEAEKKYGEPEIVELGPGDCFPNVIARNFPCCNVDVTRGC
CLPCWTLRRTCFTIVEHNWFETFIIFMILLSSGALAFEDVYIEQRKMLKTLLEYADKVFT
FIFIIEMLLKWVAYGFKNYFTNAWCLLDFVIVGVSVTSLIASFIGYDQLTAIKSLRTLRA
LRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNFFKGKFFKCVNST
DDSTMNESIIPHQNACLEQSPFLRWKNLPVNFDNVASGYLALLQVSTFKGWMDIMYAAVD
SRQNNTEQPRFEESSGYYLFFVIFIIFGAFFILNLFIGVIIDNFNQQKKKFGGEDIFLTE
EQRKYHNAMKKLGSKKPRKPVPRPNNKYQGMAYDLVHWQAFEIGIMVLICLNMLTMMIEA
DEQSDAMRTALYITNIVFIGIFTTECVLKMFALRQYFFTFPWNVFDFAVVTLSVFVKVFV
FVWRKRDPMLDPSIDLAMADNSWLSNIVEPTLFRVVRLFRVGRILRLIRGAQGIRTLLFA
LLMSLPALFNIGLLLFVVMFIFSVFGMSNFGYLKHTAGIDDIFNFETFGGSMLCLFQITT
SAGWDGLLAPTLLSKEPDCEPNAVHVGTNVVGNCGNKAIGCAFFVTYIIISFLIVVNMYI
AVILENFNVATAESSEPLSEDDFEMFYDIWGKFDPNATQFISFTELPNFIDSLDEPLRVP
KPNQLAVAVMDLPIVEGDRIHCLEVLFALTKRVLGQGEGLEGLREQMEERFIAANPEQVN
LEPVTTTLQRQQQEMAALKIQKAYRKYLESLPPEGGPARLAALREMRRASKARDHIATVV
TATRQMASAEALSSSGEDEGLTAASSNGKISESSKTG
NT seq
5694 nt
NT seq
+upstream
nt +downstream
nt
atgtcctgcatggtcggcatcccccagtcgagcggcttctttcgccacttcaccaaggag
tccgtggccaggatcgaggagcagatcgcctgggaaaaggagcgcaaggcagacaaagat
tccaccgtggtgattgagaaggtgaaaccgctcaatttcttggaggcggacaggaccatg
ccatttgtgtatggagaggttccgccgaagatgatctcggagccgctcgaggacctggac
ccctactacaggaacaagatgacgtttttggttctcaacaaaggcaagaccatcttcagg
tttaatgcgtgcaaggcgctttgtctcttcacagtgttcaaccccattaggagaatatct
atcaagatcctcactcactcattattcaccatcctcattatggcgaccattctgaccaac
tgtgtcttcatggctatcaatacggagctgaaggttgtggagtatgtgttcaccgccatc
tacatgttcgaggctctggtcaagattctggctcgaggcttcttcttcggggccttcacc
tacctgagggacccgtggaactggctggacttggccgtacttgtcatcgcatgttttacc
agcataccaggtttcgcaaatctgtcagcactgcggatgttccgagtgatgagggcgttg
aaaaccatttccgtggttccaggcctgaagacgatcgtccgagcgctcatccagtcggtg
aagaagctctcagacgtcaccatcctcaccttgttctgcctcagcatcttcgcgctgatc
gccctgcagctcttcaagggcaatctgaagaacaagtgcgtccgctggccaattccgggc
aacttcaatttcattaacatctcagagtacctggaggacaaagaaaattactacttccac
aagaatgtgccactactctgttcaaactcatcggaaaataatacttgccctgatgggtac
acctgcctcaaggccgggaaaaacccaaactacggctacaccaactacgacaatttcggc
tgggctttcctctccttgttccggctcatgacgcaggactactgggagaacctctatcag
ctgaccctgcgcgcgtccggcaaggtgtacatgatattcttcgtgatggtcatcttcctg
ggctccttctacctcattaacctcatcctggccgtggtagccaagtcttacgaggagcag
aacctggccacgcagcaggaggccgaacgcaagaaggacgagcttcaggagatgctggag
cagctgaagatccagaaggaggatcaggtcgccatggcgaccggtcaatcacggaggccc
agctactgccggagccggatggcctcggaccaatcgcatgggagcgacacgggcagcgtg
acgggggtgctggcggtgccgcgggctttggagcgccgtggcactctgctgccggaggcc
tccgagaacggcaacgatctgagccagcagctgggccgcaaggtgtacgtcctgcacccc
gacgatcggcaggagtgcgacaacgccggctcgctgctgtccatagtgatgagtgccact
ccgcagcgtgtgagcatgggcagcgtgttccgtggctcggatgacttaatgctgaacggg
cggcagatcaatcgcgagggcgacacgggcagctgccaggaggtcccctaccagccgtgg
ctcgagcgcatgccgctggggagccgcaacagccagagcagtgagggggggaaaacgatg
gatcacctgggatttgaaggaaccatgagaatgaggtctgattcctttcagatttcggca
gattttttggatgatcctatcagccgggagcgtgcgatgagtgcaataagtgccattgaa
gaagaagagaagaagaccaagtgcccgccgtgctgggacagattcgtcaacaagttcctc
atctggacctgctgcccgttctggatgagggtgaagcggctggccaagatagtggtcatg
gaccccttcttcgacctcttcatcaccctctgcatcatcatcaacacggtgttcatggcc
atggagcactaccccatgaagcctgaatttcaaacgatgctggacaccggcaacaagctc
ttcaccgcgatattcgctgcggagatggtgctgaagctggttgcgctcgacccattctac
tacttccagcagaagtggaacatcttcgactcatgcatcgtgacgctcagcttcgtggag
ctgggcctgaccggcgtcgatggcctctccgtgctgcgctcctttcgcctgctgagggtg
ttcaagctagccaagtcgtggcccacgatgaacgccctcatcaagatcatcggcaactcc
gtcggggccctgggcaacctcaccgtcatcctggtcatcgtcatcttcatcttcgccgtg
gtgggcgtgcaactcttcgcgaagcattacgatgaaaataaggcgatgcagataattccc
aacgagtgtcccctacgctggcacatgcgggacttcttccactccttcctgatcgtcttc
cgcatcctgtgcggcgagtggatcgagaacatgtggatctgcatggagctcgcgggccag
ccgctctgcatcgttgtcttcatgatggtgctcatattcggaaaccttgtggtgctgaac
ctcttcttggcgctgctgctcagctcattctgcgcagaaaacttcacggcggcagacgac
gacacagaggcgaccaacatgaagatcgcgctgggccgtatccgcaacgggatcgcctac
gtggcctccagcatccgccgcttcgtctgcaaggtgctgcgctgcgggaaggtgccggac
agcaggcagaagatcgacatcgtcaagctggagcagatgaaaaatgtctccgtgggtttc
gcgggcaccaacggcgcgaaccatgtgcacaaagtcgtgtccaacggcagcgtgtcgagc
atggccgtgcctgtcgccatgcccgagctcgagtccgacatacctgaccacggctccacg
ctcacgggttactccacccagagcctgggctccagcctggtggacgaggcaatggaggtg
gaggtgactgacggagtgctggcgagcgaagacgagaagacaaagcagcaggaggaggag
gaggaagcggagaagaagtatggggaaccggaaatcgtggagctaggacctggagactgc
tttccaaatgtgatcgcacggaacttcccgtgttgcaacgtggacgtgacgcggggctgc
tgcctgccatgctggaccctgcggcggacatgcttcaccatcgtggagcacaactggttc
gagacgttcatcatcttcatgatccttctcagcagcggagccctcgcatttgaagatgtt
tacatcgagcaaaggaaaatgttgaagaccttgctggagtacgccgacaaggtgttcacg
ttcattttcatcatcgagatgttgctcaagtgggtcgcctatggcttcaagaattacttc
accaacgcatggtgcttgctggactttgtcatcgtcggggtgtcggtgacatccctcatc
gcctcgttcatcggatacgaccagctgacggccatcaagtcactgcggaccctgcgcgct
ctcaggcctctccgggccctgtctcgtttcgaggggatgagggtggtggtgaacgcgctc
gtgggcgccatcccctccatcatgaacgtgctgctcgtgtgcctcatcttctggctcatc
ttcagcatcatgggcgtcaactttttcaagggaaagttcttcaagtgcgtgaacagtacg
gacgacagcacgatgaacgagtcaataatcccccaccaaaacgcgtgcttggagcagtcg
ccctttctgcgctggaagaaccttcctgtcaacttcgacaacgtggcctccggatacctg
gccctgctgcaagtctccacattcaagggatggatggatatcatgtacgctgcagttgat
tctcgtcaaaacaataccgaacagcctcggtttgaggagagttcgggatactatttgttc
tttgtcatcttcattatatttggagcatttttcatcctcaaccttttcattggtgtgatc
attgacaacttcaaccagcaaaagaaaaagtttggtggagaagacatcttcctcactgag
gagcagaggaaataccacaacgcgatgaagaagctcggatccaagaagcccagaaagcca
gtgccaagaccgaataacaagtaccagggaatggcgtacgacctcgtgcactggcaggca
tttgagattggcatcatggtgctaatctgcctcaacatgctgaccatgatgatagaggcg
gacgagcagagcgacgcgatgagaacggcactgtacatcaccaacatcgtcttcatcggc
atcttcaccaccgagtgtgtcctcaaaatgttcgcacttcgacagtacttcttcacgttc
ccgtggaacgtgtttgactttgccgtcgtcaccttgtccgtcttcgtgaaggtttttgtg
ttcgtgtggagaaaaagagacccaatgttggatccgtccattgacctcgcgatggctgac
aacagctggctgtccaacatcgtggagccaactttgttccgggtggtgcgtctcttccga
gttggtcgcatcctgcgtctcatccgcggggcgcagggcatccgcacgctgctcttcgcg
ctgctcatgtcgctgccggcgctcttcaacatcggcctgctcctctttgtggtcatgttc
atcttctccgtcttcggcatgtccaactttggctacctgaagcacacggccggcatcgac
gatatcttcaacttcgagacgttcggcggctccatgctgtgcctcttccagatcacgacg
tcagccggctgggacgggctcctggcaccgaccctcttgagcaaggagccggactgcgaa
ccgaacgccgttcacgtgggcaccaacgtcgtgggcaactgcggcaacaaggccatcggc
tgcgcgttcttcgtgacgtacatcatcatctccttcctcatcgtcgtcaacatgtacatc
gccgtcatcctcgagaacttcaatgtggccacggcggagagcagcgagccgcttagcgag
gatgactttgagatgttctacgacatctggggaaagttcgaccccaacgccacgcagttc
atctcattcacagagctcccgaatttcatcgacagcctcgacgaaccgctgcgcgtgccc
aagcccaaccagctggctgtggcagtcatggacctgccgatagtggaaggcgaccgcatc
cactgcctggaggtgctcttcgctctcaccaagcgcgtgctcggtcagggtgagggcctg
gagggcctgcgtgagcagatggaggagcgcttcatcgcggccaaccccgagcaggtgaac
ctcgagcccgtgacgacgacactgcagcggcagcagcaggagatggccgcgctcaagatc
cagaaggcctacaggaagtacctggagtcgctgccgcccgagggagggcccgcgcggctg
gcggcgctacgcgagatgcgtcgcgccagcaaggcccgcgaccacatcgccacggtggtc
acggcgacacgtcaaatggcttcggcggaggcgttgagctcgtcgggcgaagacgagggt
ctgacagccgccagcagcaacggcaagatttcggaaagctcaaaaactggctga
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