KEGG   Lethenteron reissneri (Far Eastern brook lamprey): 133344803
Entry
133344803         CDS       T09663                                 
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
lrj  Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04140  Autophagy - animal
lrj04148  Efferocytosis
lrj05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:lrj00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    133344803 (VPS41)
   04148 Efferocytosis
    133344803 (VPS41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    133344803 (VPS41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lrj04131]
    133344803 (VPS41)
Membrane trafficking [BR:lrj04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    133344803 (VPS41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin WD40_CDC20-Fz Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_HPS5 zf_RING_Vps8_fungal WD40_Prp19 WD40 Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR3_1st Beta-prop_WDR5 Vps39_1 TPR_7 ANAPC4_WD40 zf_RING_Vps8 Beta-prop_WDR36-Utp21_2nd Beta-prop_IP5PC_F TPR_19 WDR55 zf-RING_5 zf-rbx1 EIF3I TPR_17 zf-Vps39_C
Other DBs
NCBI-GeneID: 133344803
NCBI-ProteinID: XP_061410988
LinkDB
Position
20:complement(13437522..13466572)
AA seq 844 aa
MADVNKETFNTGDSEDDSEEELEEPKLKYERLGNEVTDILKHDAASCMAVHDKFVALGTH
FGKVFILDVDGNKIREFSSHTVTVNQISLDMDGEYIASCSDEGKVFIHGLYSSEANTDCN
FDSPIKAVALHPEFGKIQSRQYITGSDKLYLCERGWLGKQKLTVLHQGEGIITTIKWRAN
LIAWANSKGVKMYDMNLKQRITTVSRDNTSLRPEIYPCSLCWKDDLTLFIGWADTVKICV
VKERVAAENRDLPRRYVEIVSAFQVDFFVSGIAPLGNQLVVLSYMLDESTKNAYRPQLRI
LQHQEDSYEETSCDALSIRGYHQYRCCDYHLAYPTEELMYYIVSPRDVVVAKERDQDDHI
AWLLETKQYQEALLAAEVSQKSLKRHNVLDIGRAYISHLLTTGESDTAGRICQKVLGKNM
ELWEDEVYKFKKVGQLKAISRYLPRGDLRLRPAIYEMILNEFLYSDIEGFASLIREWPGN
LYNNLAIVKTVIDKLNRDPNNPVLLKTLAELYTYDQRYDKALAIYLRLKHEDVFELIHKH
NLFSAIQDKIPLLMDFDKERAAKLLLDNEDKIPITQVVTELKDRPELQHVYLHKLFQWDP
HKGDKYHELQIGLYAEYDRPNLLPFLRNSIHCPLQKALEICQQRHFIEETVFLLSRMGNS
KQALRMITEELNDVDKAIEFAKEQDDPELWDDLITYSIDKPAFVTGLLNNIGTHVDPIIL
IRRIKEGMEIPHLRDSLVKILHDYNLQISLREGCKKILVADCVALMRRLQKVQRRAIYVE
EENICEVCQSSILPEDLNRATDIVVFFCHHMFHKECISSNATFCNICSAQRRGPGSGFSG
FKTS
NT seq 2535 nt   +upstreamnt  +downstreamnt
atggccgacgtaaataaggaaacctttaacactggcgactctgaggatgactccgaggag
gagctggaggagcccaaactgaagtatgaacgcttggggaacgaggtgaccgatattttg
aagcatgacgcagccagctgcatggcggtgcacgacaagttcgtggcgttgggaacccat
tttggcaaagtgtttattttggatgtcgatggcaacaaaatcagagagttttcatctcac
acagtgactgtgaatcaaatcagcttggatatggatggagaatatatcgccagctgctct
gatgagggaaaggtattcatccatggtctttacagcagtgaggccaacacagactgcaat
tttgattcgcctattaaagcggtggctttacacccagaatttggaaagattcaatccagg
caatacattacaggaagtgacaagctttatctgtgtgagcgtggatggcttggaaagcaa
aaattaacagtgctacatcagggcgaaggaatcatcaccaccatcaagtggagagccaat
cttattgcttgggcgaatagcaagggtgtcaagatgtacgacatgaaccttaagcaacgc
atcacgacggtgtcgcgagacaataccagcctgcggcctgagatctacccctgcagcctg
tgctggaaggatgacctcacactctttatcggctgggcagacactgtgaagatatgtgtg
gttaaagagagggttgcagcagaaaaccgagacctcccacgccgctatgtggaaatagtt
tcagcattccaagtagacttctttgtgagtggcatcgcacccctgggaaaccagctggtt
gtcctgtcctacatgcttgatgaaagtaccaaaaatgcgtaccgaccacagctgcgcatt
ctgcagcatcaggaggactcgtacgaggagacctcttgtgatgccctctccattcgtggg
taccatcaataccgctgctgtgactatcacctagcttaccctacggaggagttgatgtat
tacattgtgagcccacgggatgtggtggtggcaaaggagagagaccaagatgaccacatt
gcctggctcctggagacaaagcaatatcaggaagctctgcttgcagcagaagtcagtcag
aagagtcttaagagacacaacgttttggacattggccgtgcctacatttctcatctcttg
acaacaggtgaaagtgacacagccggaaggatctgtcagaaggtactgggaaaaaatatg
gagctgtgggaggatgaagtgtacaagtttaagaaggttgggcagctcaaggccatcagt
cggtatttgccacggggtgatctgcgcttgagacctgccatctatgagatgatcctaaat
gagttcctttactcggatatagagggatttgcatccctcattcgtgagtggcctggaaac
ctctataataacctggccattgtgaagacggtcattgacaagctgaaccgtgaccccaac
aaccctgtcctgctcaaaacgctggctgagctctatacgtatgaccagcgctatgacaag
gctctcgcgatttacctgcgcctcaagcacgaagatgtgttcgagctgattcacaagcac
aacctcttctctgctatacaagacaagatacctttgctcatggactttgacaaggagaga
gctgcaaagttacttctggacaatgaagacaaaatccccatcacgcaagtagtgacggag
ttgaaggatcggccagagctgcaacatgtgtacttgcacaagttgttccagtgggaccca
cacaagggcgacaaatatcacgagttgcaaattgggctgtatgcggagtacgaccgtccg
aacctgcttcccttcctgagaaacagcattcactgcccgctacaaaaggctctcgaaatc
tgtcaacagaggcattttattgaagagacggtttttctccttagtcgtatggggaacagc
aagcaggccttgcggatgatcacagaggagctaaatgacgtggacaaagccatcgagttt
gcaaaggaacaggatgacccagagctctgggatgacctcatcacctactctatagataaa
cctgcttttgttacgggcttgctgaacaacattggaacacacgttgatcccatcatcctt
atccggcgtatcaaggagggaatggagatcccacacctgcgcgactcccttgtgaaaatt
ctacacgactacaatctccagatctcactgcgtgaaggttgtaagaagatcctagttgcc
gattgcgttgctctcatgaggaggctgcagaaagttcagcgacgtgcaatttatgttgag
gaggaaaatatttgtgaggtctgccaatcatctattttgccagaagatctgaacagagct
actgacatcgtggtcttcttctgccatcacatgttccacaaggaatgcatctccagcaat
gccacgttctgcaatatctgcagtgcccagcggagggggccaggcagtggattttcagga
ttcaaaacgtcatga

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