Lethenteron reissneri (Far Eastern brook lamprey): 133345125
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Entry
133345125 CDS
T09663
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03030
DNA replication
lrj03410
Base excision repair
lrj03420
Nucleotide excision repair
lrj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133345125 (LIG1)
03410 Base excision repair
133345125 (LIG1)
03420 Nucleotide excision repair
133345125 (LIG1)
03430 Mismatch repair
133345125 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrj03032
]
133345125 (LIG1)
03400 DNA repair and recombination proteins [BR:
lrj03400
]
133345125 (LIG1)
Enzymes [BR:
lrj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
133345125 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
133345125 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
133345125 (LIG1)
DNA replication proteins [BR:
lrj03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
133345125 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
133345125 (LIG1)
DNA repair and recombination proteins [BR:
lrj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
133345125 (LIG1)
NER (nucleotide excision repair)
Other NER factors
133345125 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
133345125 (LIG1)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
133345125
NCBI-ProteinID:
XP_061411606
LinkDB
All DBs
Position
3:2432184..2459680
Genome browser
AA seq
1077 aa
AA seq
DB search
MQRSIASFFQPAKGQQPEKIKPKQPEKTKPKAEKVVTKTPLKAKKNGCSPPAADNTESPV
KRSKKKTRRVLESDDDDDNDDNVDEEARNNGVPKSTGSEKSKTTESTVTPDKNTMRVKRE
TPERKPTPEQKKTPKNSKVLVEKDKTAGHEVKSNGKSKESPGKQSDEEVDTSTSEPEASK
AKETEDVNAKTGTSSPTLPTSPEGNLVIPKRKTARKQLPKRKLDASPEASNSSKKPKQED
AGDTPAKKQETIPTSKEHGQNVAEPMDVDTSATEAEITKPKDKANTSGDSAHEPTAEEGS
PEREKKSVKKKIKERIISPDKADESSKQTPKKKATEKPAPNSKGKEVMSSFFAPRKSCAK
VMEEEQKVPEENKNTADEEVEEAKEKPDKEKAVDKDVTPSPKPISSFFGGGKVETSPGSQ
ENYNPAKSHYHPINDACWEHEQRVPYLAVARTFEKIEEESARLKIVETLSNFLRSVIVLT
PDDLLPCIYLCLNQLGPAYLGQELGIGETILMKAVAQATGRQLDKIKAETQEKGDLGIVA
ECSRSTQRTMFTPPKLNATTVFSKLKDISRLTGNTSMNKKIDVVKTMFVACRHSEARYLI
RSLGGKLRIGLAEQSVIAALAQAVSLTPPGQEFPPKVLDGGKGMSPDSRKAWIEEKNQIL
KQTYCELPNYDVIVSTLLKEGLDNLPKFCKLTPGVPMKPMLAHPTKGIGEVLKRFDEAAF
TCEYKYDGERAQIHLLENGDIHIYSRNQENNTSKYPDIISRFSKVKKEHVRSCVIDSEAV
AWDQEKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVKEPFRRRRELLR
AAFEEVEGEFMFATAMIGSNTEEIAEFLEQSVRDSCEGLMVKTLDVDATYEIAKRSHNWL
KLKKDYLEGVGDTLDLLVVGGYHGRGKRTGTYGGFLLACYDDENEEYQTICKIGTGFKDE
DLEKHAAFFKEHVIERPRSYYRFESGAEPDHWFDAVQVWEVKCADLSVSPVYKAANGLVD
KQKGVSLRFPRFLRVRDDKKPEDATSSSQVAELYNKQQQIQNQKSSVAEDVGEEEFY
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgcagagatccatcgcgtcttttttccagccagcaaagggccagcagcctgagaaaata
aaacccaagcagcctgagaaaaccaagccaaaagcagaaaaagtagtgacgaaaactcca
cttaaagcaaagaagaatggttgctctccacctgctgctgacaacaccgaatcccccgtt
aaaagatctaaaaagaaaacgcggcgagtcctggagagcgatgacgacgatgataacgac
gacaatgttgacgaggaagcacgtaacaacggtgtgcctaagagcacaggctcggaaaag
agcaaaaccacggagagcaccgttaccccggataagaatacgatgcgagtaaagagggag
accccagaaaggaagccaacgccagagcagaagaagactcctaagaatagtaaagtctta
gtggagaaggacaaaacagcagggcacgaggtgaagtcgaatgggaagagtaaagaatca
cctggcaaacagagtgacgaggaggtcgacacctccacctctgaacccgaggcaagcaag
gcaaaggagactgaagatgtgaatgcaaagactggaacttcaagtcccacgctgcccaca
tccccagaaggaaatttggtcattccaaagcgcaagacagcccgtaaacaattacctaag
cggaagctcgatgcctcccctgaagcctcaaattcctccaagaagcccaaacaagaggac
gcaggagacacaccagccaagaagcaggagacgattcccacgagcaaagagcacgggcag
aatgtggccgagccaatggacgtggatacgtcggcgactgaagcagagatcacgaaacca
aaggacaaagcaaacacaagcggagactccgcacacgagcccactgctgaggagggctcc
cccgagcgtgaaaaaaaatctgtgaagaagaaaattaaggaaaggatcatttctccagat
aaggcagacgagtcttcaaaacagacaccaaagaagaaagcaacagagaagccagccccc
aacagcaagggcaaagaagtcatgagcagcttttttgcgccgaggaagagctgtgccaag
gtcatggaggaagagcagaaggtgccggaggagaataagaacacggcagatgaagaggta
gaggaagcgaaagagaagccggacaaggaaaaggctgttgacaaagatgttacaccgagc
cccaagcctattagcagcttttttggaggtggaaaagtggagacgtcaccaggctcacaa
gaaaactacaatcccgcgaaaagccattaccacccaataaatgacgcctgctgggaacat
gaacaaagggttccctatcttgctgtagcaaggacgtttgagaaaattgaggaggagtct
gctcggctcaagatcgtggagacgctgagcaacttcctgcgttctgtcatagtactcacc
ccagacgacctccttccatgcatttacctgtgcctcaatcagctgggccctgcctacctg
ggccaggagctcggcatcggggagaccatcctcatgaaagccgttgctcaggctacaggg
cggcagctggacaagatcaaggcggagacccaggagaagggagacctggggattgtggcc
gagtgtagccgcagcacccagcgcaccatgttcacccctcccaagctgaacgccaccacg
gtgttcagcaagctcaaggacatctcccgcttgacgggaaatacttctatgaacaagaag
attgatgttgtgaagaccatgtttgtggcctgtcggcactcagaggctcgctacctcatc
aggtcactgggagggaagctgcgtattgggttggcagaacagtccgtcatcgctgccctc
gcccaagccgtcagcctgacacctcctggacaagagttcccaccgaaggtactggacggt
ggaaaaggcatgtcgcctgactctcggaaggcatggatagaagagaagaaccagattctg
aagcagacttactgtgaattgccaaactacgacgtgattgtgtcaaccctgctcaaagag
ggcctggataacttgcccaagttctgcaaactcaccccaggagtgcccatgaagcccatg
ctggcacacccaaccaagggcattggagaagtgctcaagaggtttgatgaagcagccttc
acttgcgagtacaagtatgatggagagcgggcacagattcatctgttggagaatggggac
atccatatctacagccgaaaccaggagaacaacaccagcaagtaccctgacatcatcagc
cgttttagcaaggtcaagaaggagcacgtgcgttcatgtgtcatcgactcggaggccgta
gcctgggatcaggagaagaagcagattcagcccttccaggtgctcaccacccgcaagcgg
aaggatgttgatgcctcagaaattaaagttcaagtctgtgtctatgcctttgatctgctc
tacttgaatggggagtcgctggtgaaggagccgttccggcgccggcgggagcttctgcgt
gctgcgtttgaggaggtggaaggggaattcatgtttgccacagccatgatcggctcgaac
acggaggaaattgcggagttcctggagcaatctgttcgtgattcttgtgaaggcctcatg
gtgaagactcttgatgtggacgccacctatgagattgccaagaggtcccacaactggttg
aagctaaagaaggactacctggagggggttggagacaccctggacctgctggtggtaggt
ggataccatggccggggcaagcgcacgggcacgtacggtggcttcctgctcgcttgctac
gacgacgagaacgaggagtaccagacaatctgcaagattggcacgggatttaaggatgaa
gacctggagaagcatgctgccttttttaaggagcatgtgattgagcgtccgcggtcgtac
taccgcttcgagagtggcgcagagcccgaccactggttcgacgctgtgcaggtgtgggag
gtcaagtgtgccgacctctcagtgtctccggtctacaaggcagccaatggcctggtggac
aagcagaagggcgtgtccctgcgctttcctcgctttctccgcgtgcgtgacgacaagaag
ccagaggacgccaccagcagctcgcaggtggcagagctttataacaagcagcagcagata
cagaatcagaaatcatcggtggccgaggatgtgggcgaagaagagttttactag
DBGET
integrated database retrieval system