KEGG   Lethenteron reissneri (Far Eastern brook lamprey): 133345125
Entry
133345125         CDS       T09663                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lrj  Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03030  DNA replication
lrj03410  Base excision repair
lrj03420  Nucleotide excision repair
lrj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lrj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    133345125 (LIG1)
   03410 Base excision repair
    133345125 (LIG1)
   03420 Nucleotide excision repair
    133345125 (LIG1)
   03430 Mismatch repair
    133345125 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lrj03032]
    133345125 (LIG1)
   03400 DNA repair and recombination proteins [BR:lrj03400]
    133345125 (LIG1)
Enzymes [BR:lrj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     133345125 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     133345125 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     133345125 (LIG1)
DNA replication proteins [BR:lrj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    133345125 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     133345125 (LIG1)
DNA repair and recombination proteins [BR:lrj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     133345125 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     133345125 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     133345125 (LIG1)
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 133345125
NCBI-ProteinID: XP_061411606
LinkDB
Position
3:2432184..2459680
AA seq 1077 aa
MQRSIASFFQPAKGQQPEKIKPKQPEKTKPKAEKVVTKTPLKAKKNGCSPPAADNTESPV
KRSKKKTRRVLESDDDDDNDDNVDEEARNNGVPKSTGSEKSKTTESTVTPDKNTMRVKRE
TPERKPTPEQKKTPKNSKVLVEKDKTAGHEVKSNGKSKESPGKQSDEEVDTSTSEPEASK
AKETEDVNAKTGTSSPTLPTSPEGNLVIPKRKTARKQLPKRKLDASPEASNSSKKPKQED
AGDTPAKKQETIPTSKEHGQNVAEPMDVDTSATEAEITKPKDKANTSGDSAHEPTAEEGS
PEREKKSVKKKIKERIISPDKADESSKQTPKKKATEKPAPNSKGKEVMSSFFAPRKSCAK
VMEEEQKVPEENKNTADEEVEEAKEKPDKEKAVDKDVTPSPKPISSFFGGGKVETSPGSQ
ENYNPAKSHYHPINDACWEHEQRVPYLAVARTFEKIEEESARLKIVETLSNFLRSVIVLT
PDDLLPCIYLCLNQLGPAYLGQELGIGETILMKAVAQATGRQLDKIKAETQEKGDLGIVA
ECSRSTQRTMFTPPKLNATTVFSKLKDISRLTGNTSMNKKIDVVKTMFVACRHSEARYLI
RSLGGKLRIGLAEQSVIAALAQAVSLTPPGQEFPPKVLDGGKGMSPDSRKAWIEEKNQIL
KQTYCELPNYDVIVSTLLKEGLDNLPKFCKLTPGVPMKPMLAHPTKGIGEVLKRFDEAAF
TCEYKYDGERAQIHLLENGDIHIYSRNQENNTSKYPDIISRFSKVKKEHVRSCVIDSEAV
AWDQEKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVKEPFRRRRELLR
AAFEEVEGEFMFATAMIGSNTEEIAEFLEQSVRDSCEGLMVKTLDVDATYEIAKRSHNWL
KLKKDYLEGVGDTLDLLVVGGYHGRGKRTGTYGGFLLACYDDENEEYQTICKIGTGFKDE
DLEKHAAFFKEHVIERPRSYYRFESGAEPDHWFDAVQVWEVKCADLSVSPVYKAANGLVD
KQKGVSLRFPRFLRVRDDKKPEDATSSSQVAELYNKQQQIQNQKSSVAEDVGEEEFY
NT seq 3234 nt   +upstreamnt  +downstreamnt
atgcagagatccatcgcgtcttttttccagccagcaaagggccagcagcctgagaaaata
aaacccaagcagcctgagaaaaccaagccaaaagcagaaaaagtagtgacgaaaactcca
cttaaagcaaagaagaatggttgctctccacctgctgctgacaacaccgaatcccccgtt
aaaagatctaaaaagaaaacgcggcgagtcctggagagcgatgacgacgatgataacgac
gacaatgttgacgaggaagcacgtaacaacggtgtgcctaagagcacaggctcggaaaag
agcaaaaccacggagagcaccgttaccccggataagaatacgatgcgagtaaagagggag
accccagaaaggaagccaacgccagagcagaagaagactcctaagaatagtaaagtctta
gtggagaaggacaaaacagcagggcacgaggtgaagtcgaatgggaagagtaaagaatca
cctggcaaacagagtgacgaggaggtcgacacctccacctctgaacccgaggcaagcaag
gcaaaggagactgaagatgtgaatgcaaagactggaacttcaagtcccacgctgcccaca
tccccagaaggaaatttggtcattccaaagcgcaagacagcccgtaaacaattacctaag
cggaagctcgatgcctcccctgaagcctcaaattcctccaagaagcccaaacaagaggac
gcaggagacacaccagccaagaagcaggagacgattcccacgagcaaagagcacgggcag
aatgtggccgagccaatggacgtggatacgtcggcgactgaagcagagatcacgaaacca
aaggacaaagcaaacacaagcggagactccgcacacgagcccactgctgaggagggctcc
cccgagcgtgaaaaaaaatctgtgaagaagaaaattaaggaaaggatcatttctccagat
aaggcagacgagtcttcaaaacagacaccaaagaagaaagcaacagagaagccagccccc
aacagcaagggcaaagaagtcatgagcagcttttttgcgccgaggaagagctgtgccaag
gtcatggaggaagagcagaaggtgccggaggagaataagaacacggcagatgaagaggta
gaggaagcgaaagagaagccggacaaggaaaaggctgttgacaaagatgttacaccgagc
cccaagcctattagcagcttttttggaggtggaaaagtggagacgtcaccaggctcacaa
gaaaactacaatcccgcgaaaagccattaccacccaataaatgacgcctgctgggaacat
gaacaaagggttccctatcttgctgtagcaaggacgtttgagaaaattgaggaggagtct
gctcggctcaagatcgtggagacgctgagcaacttcctgcgttctgtcatagtactcacc
ccagacgacctccttccatgcatttacctgtgcctcaatcagctgggccctgcctacctg
ggccaggagctcggcatcggggagaccatcctcatgaaagccgttgctcaggctacaggg
cggcagctggacaagatcaaggcggagacccaggagaagggagacctggggattgtggcc
gagtgtagccgcagcacccagcgcaccatgttcacccctcccaagctgaacgccaccacg
gtgttcagcaagctcaaggacatctcccgcttgacgggaaatacttctatgaacaagaag
attgatgttgtgaagaccatgtttgtggcctgtcggcactcagaggctcgctacctcatc
aggtcactgggagggaagctgcgtattgggttggcagaacagtccgtcatcgctgccctc
gcccaagccgtcagcctgacacctcctggacaagagttcccaccgaaggtactggacggt
ggaaaaggcatgtcgcctgactctcggaaggcatggatagaagagaagaaccagattctg
aagcagacttactgtgaattgccaaactacgacgtgattgtgtcaaccctgctcaaagag
ggcctggataacttgcccaagttctgcaaactcaccccaggagtgcccatgaagcccatg
ctggcacacccaaccaagggcattggagaagtgctcaagaggtttgatgaagcagccttc
acttgcgagtacaagtatgatggagagcgggcacagattcatctgttggagaatggggac
atccatatctacagccgaaaccaggagaacaacaccagcaagtaccctgacatcatcagc
cgttttagcaaggtcaagaaggagcacgtgcgttcatgtgtcatcgactcggaggccgta
gcctgggatcaggagaagaagcagattcagcccttccaggtgctcaccacccgcaagcgg
aaggatgttgatgcctcagaaattaaagttcaagtctgtgtctatgcctttgatctgctc
tacttgaatggggagtcgctggtgaaggagccgttccggcgccggcgggagcttctgcgt
gctgcgtttgaggaggtggaaggggaattcatgtttgccacagccatgatcggctcgaac
acggaggaaattgcggagttcctggagcaatctgttcgtgattcttgtgaaggcctcatg
gtgaagactcttgatgtggacgccacctatgagattgccaagaggtcccacaactggttg
aagctaaagaaggactacctggagggggttggagacaccctggacctgctggtggtaggt
ggataccatggccggggcaagcgcacgggcacgtacggtggcttcctgctcgcttgctac
gacgacgagaacgaggagtaccagacaatctgcaagattggcacgggatttaaggatgaa
gacctggagaagcatgctgccttttttaaggagcatgtgattgagcgtccgcggtcgtac
taccgcttcgagagtggcgcagagcccgaccactggttcgacgctgtgcaggtgtgggag
gtcaagtgtgccgacctctcagtgtctccggtctacaaggcagccaatggcctggtggac
aagcagaagggcgtgtccctgcgctttcctcgctttctccgcgtgcgtgacgacaagaag
ccagaggacgccaccagcagctcgcaggtggcagagctttataacaagcagcagcagata
cagaatcagaaatcatcggtggccgaggatgtgggcgaagaagagttttactag

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